Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,334,099 – 12,334,192 |
Length | 93 |
Max. P | 0.999221 |
Location | 12,334,099 – 12,334,192 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -16.40 |
Consensus MFE | -16.38 |
Energy contribution | -16.22 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -2.16 |
Structure conservation index | 1.00 |
SVM decision value | 3.44 |
SVM RNA-class probability | 0.999221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12334099 93 + 22224390 GCGUAUCGGAAUGAA-------AUGCAAAGAACA--UCAAAAAAUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACACCAUAAACGCAGA (((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).......))))... ( -15.40) >DroSec_CAF1 11128 92 + 1 GCGUAUCGGAAUGAA-------AUCCAAAGAACC--CCAAAAACUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA (((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).-.....))))... ( -15.60) >DroSim_CAF1 11629 92 + 1 GCGUAUCGGAAUGAA-------AUCCAAAGAACC--CCAAAAACUCUAAAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAGCGCAGA (((((((((......-------......(((...--........)))...........((((((..---.))))))..)))))((....)).-.....))))... ( -15.90) >DroEre_CAF1 11014 98 + 1 GCGUAUCGGAAUGAAAUCUGAAAUCCGAAGAACC--ACAAAAACUUU-AAAACUCAAAUCUUGGAA---CCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA (((((((((.......(((.........)))...--...........-..........((((((..---.))))))..)))))((....)).-.....))))... ( -16.80) >DroYak_CAF1 12217 96 + 1 GCGUAUCGGAAUAAA-------AUCCAAAGAAUCUCUCAAAAACUUC-AAAACACAAAUCUUGGAGUCUCCCAAGAGACCGAUGUAAUUACA-CAUAAACGCAGA (((((((((......-------.((....)).(((((.....(((((-((..........)))))))......))))))))))((....)).-.....))))... ( -18.30) >consensus GCGUAUCGGAAUGAA_______AUCCAAAGAACC__CCAAAAACUCUAAAAACUCAAAUCUUGGAA___CCCAAGAGACCGAUGUAAUUACA_CAUAAACGCAGA (((((((((....................(.......)....................((((((......))))))..)))))((....)).......))))... (-16.38 = -16.22 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:22 2006