Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,328,449 – 12,328,542 |
Length | 93 |
Max. P | 0.519311 |
Location | 12,328,449 – 12,328,542 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.33 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -20.71 |
Energy contribution | -20.97 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.20 |
Mean z-score | -1.42 |
Structure conservation index | 0.58 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12328449 93 + 22224390 A---UUUCCCAGGAGCAGCUCGAUCCGUUUCCUGGCCUCCACAAAGGCGGCCAUUACUUCGUCCAGAGUGGUGGCCCUCGAAGUAUCCGGAU-----UUGA .---....((.(((...((((((...........((((......))))(((((((((((......))))))))))).))).))).)))))..-----.... ( -31.40) >DroSec_CAF1 5596 93 + 1 G---UUUCCCAGGAGCAGCUCGAUCCGUUUCCUGGCCUCCACAAAGGCGGCCAUUACCUCGUCCAGAGUGGUGGCCCUCGCAGUAUCAGGAU-----UUGA (---(((.....)))).........((..(((((((((......))))(((((((((.((.....)))))))))))..........))))).-----.)). ( -32.00) >DroEre_CAF1 5309 93 + 1 G---GUUCCCAGGAGCAACUCGAUCCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAAGGUGGUGGCCCUCGAAGUAUCAGCGU-----UCGA .---((((....))))...((((..((((.....((((......))))(((((((((((......)))))))))))...........)))).-----)))) ( -35.50) >DroYak_CAF1 6826 93 + 1 G---GUUCCCAGCAGCAACUCGAUGCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAAGGUGGUGGCCCUCGAAGUAUCGGCAU-----UCGA .---..........((....((((((.(((....((((......))))(((((((((((......)))))))))))...)))))))))))..-----.... ( -35.10) >DroMoj_CAF1 3099 101 + 1 UGAUUUGCCCAAGAGCGCCGCGAUGCGGUCCCUGGCCUCGACGUAGGCAGCCAUCACCUCCUGCAGCGUGGUCGAGAUGGUCGCCUUGGGCUCGUGGCUAA ......(((((((.((((((((.((.(((.....))).)).))).))).((((((.(..((........))..).)))))).))))))))).......... ( -40.70) >DroAna_CAF1 14123 96 + 1 GGCUUUCACCAGGAGGGACUCUAUUCUCUCCCUGGCCUCCACGUAGGCGGUCAUCACCUCGUCCAGAGUGGUGGCCCUGGCGGUGUCCGCCA-----CCGA (((...((((.(((((((......)))))))...((((......))))(((((((((.((.....))))))))))).....))))...))).-----.... ( -41.40) >consensus G___UUUCCCAGGAGCAACUCGAUCCGUUCCCUGGCCUCCACAAAGGCGGCCAUCACCUCGUCCAGAGUGGUGGCCCUCGAAGUAUCAGCAU_____UCGA .........(((((((..........))).))))((((......))))(((((((((..........)))))))))......................... (-20.71 = -20.97 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:20 2006