Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,326,687 – 12,326,807 |
Length | 120 |
Max. P | 0.864441 |
Location | 12,326,687 – 12,326,807 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -22.68 |
Energy contribution | -22.92 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 0.93 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12326687 120 + 22224390 UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUAUCAUGCGGAUACAAUGGAGAAGUACUAUAACUACAAGGAAUACACCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC ....(((((.....))))).....(((((.((((((((.((((.....))))..)))).(((((.............((......)).((....)).)))))..)))))))))....... ( -22.30) >DroSec_CAF1 4722 120 + 1 UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAAAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC ....(((((.....))))).....(((((.((((((.....((((..(....).))))...................(((....)))......)))))).........)))))....... ( -21.80) >DroSim_CAF1 4808 120 + 1 UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC ......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... ( -25.30) >DroEre_CAF1 4853 120 + 1 UUUUACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACCACAACUACAAGGAAUACUCCAACUACGGCCACUUCGAUUACUCCUUCUUCAAU ......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... ( -24.90) >DroYak_CAF1 6441 120 + 1 UUCUACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUGCAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACACCUUCUUCAGC ......(((.((.....(((((((..(((((....))))).((((((....)).)))).)))))))...........(((....)))......)).)))..................... ( -27.10) >consensus UUCCACGUGCCCAACAUGUACUUCAAGGAUGUGACCAUCUACCAUGCGGAUACAAUGGAGAAGUACUACAACUACAAGGAAUACUCCAACUACGGUCACUUCGAUUACUCCUUCUUCAAC ......(((.((.....(((((((..(((((....))))).((((..(....).)))).)))))))...........(((....)))......)).)))..................... (-22.68 = -22.92 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:19 2006