Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,320,781 – 12,320,883 |
Length | 102 |
Max. P | 0.999938 |
Location | 12,320,781 – 12,320,883 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.09 |
Mean single sequence MFE | -37.84 |
Consensus MFE | -35.72 |
Energy contribution | -35.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.70 |
Structure conservation index | 0.94 |
SVM decision value | 4.54 |
SVM RNA-class probability | 0.999917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12320781 102 + 22224390 CUUUU-UUUGAUUCUAAGCGGCUGCGACGCCGACAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGUCGACUUCGCUGCCGGCGUCGCUGAUAAUACCAUA .....-............((((.((((.(.(((((((((......(((.....)))......))))))))).).)))).)))).................... ( -27.50) >DroSec_CAF1 22954 102 + 1 CUUUU-AUCGAUUCUAAGCGGCUGCGACGCCGGCAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGCCGACUUCGCUGCCGGCGUCGCAGAUAAUACCAUA .....-...............(((((((((((((((.(((..........)))((((..........))))......)))))))))))))))........... ( -39.40) >DroSim_CAF1 23422 102 + 1 CUUUU-UUCGAUUCUAAGCGGCUGCGACGCCGGCAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGCCGACUUCGCUGCCGGCGUCGCAGAUAAUACCAUA .....-...............(((((((((((((((.(((..........)))((((..........))))......)))))))))))))))........... ( -39.40) >DroEre_CAF1 22889 100 + 1 CUUU--UUCGAUUCUA-GCGGCUGCGACGCCGGCAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGCCGACUUCGCUGCCGGCGUCGCAGCUUAUACCAUA ....--..........-..(((((((((((((((((.(((..........)))((((..........))))......)))))))))))))))))......... ( -43.50) >DroYak_CAF1 22700 103 + 1 CUUUUUUUCGAUUCUAAGCGGCUGCGACGCCGGCAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGCCGACUUCGCUGCCGGCGUCGCAGAUAAUACCAUA .....................(((((((((((((((.(((..........)))((((..........))))......)))))))))))))))........... ( -39.40) >consensus CUUUU_UUCGAUUCUAAGCGGCUGCGACGCCGGCAGAGGCUCAGUUCGUUGUCCGGUUCCUAUUUCUGCCGACUUCGCUGCCGGCGUCGCAGAUAAUACCAUA .....................(((((((((((((((.(((..........)))((((..........))))......)))))))))))))))........... (-35.72 = -35.96 + 0.24)
Location | 12,320,781 – 12,320,883 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 96.09 |
Mean single sequence MFE | -37.24 |
Consensus MFE | -35.66 |
Energy contribution | -35.74 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -2.67 |
Structure conservation index | 0.96 |
SVM decision value | 4.69 |
SVM RNA-class probability | 0.999938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12320781 102 - 22224390 UAUGGUAUUAUCAGCGACGCCGGCAGCGAAGUCGACAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGUCGGCGUCGCAGCCGCUUAGAAUCAAA-AAAAG ..((((.(((..((((....)(((.((((.(((((((((....((...(((........)))..))))))))))).)))).))))))))).))))..-..... ( -32.10) >DroSec_CAF1 22954 102 - 1 UAUGGUAUUAUCUGCGACGCCGGCAGCGAAGUCGGCAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGCCGGCGUCGCAGCCGCUUAGAAUCGAU-AAAAG ..((((.(((.(((((((((((((((((....))........(((...(((........)))..)))))))))))))))))).....))).))))..-..... ( -37.40) >DroSim_CAF1 23422 102 - 1 UAUGGUAUUAUCUGCGACGCCGGCAGCGAAGUCGGCAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGCCGGCGUCGCAGCCGCUUAGAAUCGAA-AAAAG ..((((.(((.(((((((((((((((((....))........(((...(((........)))..)))))))))))))))))).....))).))))..-..... ( -37.40) >DroEre_CAF1 22889 100 - 1 UAUGGUAUAAGCUGCGACGCCGGCAGCGAAGUCGGCAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGCCGGCGUCGCAGCCGC-UAGAAUCGAA--AAAG ..((((....((((((((((((((((((....))........(((...(((........)))..))))))))))))))))))).))-))........--.... ( -41.90) >DroYak_CAF1 22700 103 - 1 UAUGGUAUUAUCUGCGACGCCGGCAGCGAAGUCGGCAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGCCGGCGUCGCAGCCGCUUAGAAUCGAAAAAAAG ..((((.(((.(((((((((((((((((....))........(((...(((........)))..)))))))))))))))))).....))).))))........ ( -37.40) >consensus UAUGGUAUUAUCUGCGACGCCGGCAGCGAAGUCGGCAGAAAUAGGAACCGGACAACGAACUGAGCCUCUGCCGGCGUCGCAGCCGCUUAGAAUCGAA_AAAAG ..((((.(((.(((((((((((((((((....))........(((...(((........)))..)))))))))))))))))).....))).))))........ (-35.66 = -35.74 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:17 2006