Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,317,876 – 12,317,975 |
Length | 99 |
Max. P | 0.958429 |
Location | 12,317,876 – 12,317,975 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.72 |
Mean single sequence MFE | -20.23 |
Consensus MFE | -18.75 |
Energy contribution | -19.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.93 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12317876 99 - 22224390 GGAUGAUGUAAAAGUUAUGUAAAACCA---------------------AAACCAAGAUACGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU ..(((((......(((((((.......---------------------...((............)).......((((((....)))))).............))))))).....))))) ( -20.60) >DroSec_CAF1 19969 93 - 1 GGAUGAUGUAAAAGUUAUGUAAAA---------------------------CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU ..(((((......(((((((....---------------------------......(((......))).....((((((....)))))).............))))))).....))))) ( -21.00) >DroSim_CAF1 20480 93 - 1 GGAUGAUGUAAAAGUUAUGUAAAA---------------------------CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAGGAGUCAU ..(((((......(((((((....---------------------------......(((......))).....((((((....)))))).............))))))).....))))) ( -21.00) >DroYak_CAF1 19540 120 - 1 GGAUGAUGUAAAAGUUAUGUAAAAUCACAAAAAUCAUUAAGAUCAGUAAAAACAAGAUUCGAUUAAGAAAACACGCACUGAAAUCAGAGCCUAAAAUUGACCAGCAUGACGAACAGUCAU ..(((((......(((((((.............((.....))(((((..........(((......))).....((.(((....))).)).....)))))...))))))).....))))) ( -18.30) >consensus GGAUGAUGUAAAAGUUAUGUAAAA___________________________CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU ..(((((......(((((((.....................................(((......))).....((((((....)))))).............))))))).....))))) (-18.75 = -19.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:16 2006