Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,388,076 – 1,388,171 |
Length | 95 |
Max. P | 0.910686 |
Location | 1,388,076 – 1,388,171 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 89.93 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -23.30 |
Energy contribution | -24.05 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -2.31 |
Structure conservation index | 0.79 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1388076 95 + 22224390 UCGGGGGGAUCUCCAGGAUCUAGUUCCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCCCCCACCAU ..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... ( -34.90) >DroSec_CAF1 15462 95 + 1 UCGGGGGGAUCUCCAGGAUCUAGUUUCUUUGUUGUGAAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCUCCCACCAC ..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... ( -29.50) >DroEre_CAF1 14355 91 + 1 UCGCGGGGAUCUGC-GGAUCUAGUUUCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUUCGUCCUG--- .....(((((..((-(((....(((((........)))))((.((((...(((........)))..))))))......)))))...))))).--- ( -25.50) >DroYak_CAF1 3690 91 + 1 UCGGCGGGAUCUUC-GGAUCUAGUUUCUUUGUUGCGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCGUCCUG--- ..(((((((((...-.)))).............((((((.((.((((...(((........)))..)))))).....)))))).)))))...--- ( -28.80) >consensus UCGGGGGGAUCUCC_GGAUCUAGUUUCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCGCCCAC___ ..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... (-23.30 = -24.05 + 0.75)
Location | 1,388,076 – 1,388,171 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 89.93 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -21.67 |
Energy contribution | -23.55 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.04 |
Mean z-score | -2.30 |
Structure conservation index | 0.71 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1388076 95 - 22224390 AUGGUGGGGGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGGAACUAGAUCCUGGAGAUCCCCCCGA ....((((((((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).)))))))). ( -39.30) >DroSec_CAF1 15462 95 - 1 GUGGUGGGAGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUUCACAACAAAGAAACUAGAUCCUGGAGAUCCCCCCGA ....((((.(((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).))).)))). ( -30.00) >DroEre_CAF1 14355 91 - 1 ---CAGGACGAAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGAAACUAGAUCC-GCAGAUCCCCGCGA ---.........((((..(((..(((((((((((........))))).)))).))..)))...............((((.-...)))).)))).. ( -24.10) >DroYak_CAF1 3690 91 - 1 ---CAGGACGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCGCAACAAAGAAACUAGAUCC-GAAGAUCCCGCCGA ---..((.(((.((((((.....(((((((((((........))))).)))).)).)))))).............((((.-...))))))))).. ( -28.40) >consensus ___CAGGACGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGAAACUAGAUCC_GGAGAUCCCCCCGA .....(((.(((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).))).))).. (-21.67 = -23.55 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:26 2006