Locus 474

Sequence ID X_DroMel_CAF1
Location 1,388,076 – 1,388,171
Length 95
Max. P 0.910686
window727 window728

overview

Window 7

Location 1,388,076 – 1,388,171
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 89.93
Mean single sequence MFE -29.68
Consensus MFE -23.30
Energy contribution -24.05
Covariance contribution 0.75
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.79
SVM decision value 1.07
SVM RNA-class probability 0.910686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1388076 95 + 22224390
UCGGGGGGAUCUCCAGGAUCUAGUUCCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCCCCCACCAU
..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... ( -34.90)
>DroSec_CAF1 15462 95 + 1
UCGGGGGGAUCUCCAGGAUCUAGUUUCUUUGUUGUGAAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCUCCCACCAC
..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... ( -29.50)
>DroEre_CAF1 14355 91 + 1
UCGCGGGGAUCUGC-GGAUCUAGUUUCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUUCGUCCUG---
.....(((((..((-(((....(((((........)))))((.((((...(((........)))..))))))......)))))...))))).--- ( -25.50)
>DroYak_CAF1 3690 91 + 1
UCGGCGGGAUCUUC-GGAUCUAGUUUCUUUGUUGCGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCGUCCUG---
..(((((((((...-.)))).............((((((.((.((((...(((........)))..)))))).....)))))).)))))...--- ( -28.80)
>consensus
UCGGGGGGAUCUCC_GGAUCUAGUUUCUUUGUUGUGGAACAGCAGCCGUAAUGUAUCCUGUCAUCAGGCUCUUAUCCUUCCGCUCCGCCCAC___
..(((((((.(...(((((...(((((........)))))((.((((...(((........)))..)))))).)))))...).)))))))..... (-23.30 = -24.05 +   0.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 1,388,076 – 1,388,171
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 89.93
Mean single sequence MFE -30.45
Consensus MFE -21.67
Energy contribution -23.55
Covariance contribution 1.88
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.71
SVM decision value 0.49
SVM RNA-class probability 0.755386
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1388076 95 - 22224390
AUGGUGGGGGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGGAACUAGAUCCUGGAGAUCCCCCCGA
....((((((((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).)))))))). ( -39.30)
>DroSec_CAF1 15462 95 - 1
GUGGUGGGAGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUUCACAACAAAGAAACUAGAUCCUGGAGAUCCCCCCGA
....((((.(((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).))).)))). ( -30.00)
>DroEre_CAF1 14355 91 - 1
---CAGGACGAAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGAAACUAGAUCC-GCAGAUCCCCGCGA
---.........((((..(((..(((((((((((........))))).)))).))..)))...............((((.-...)))).)))).. ( -24.10)
>DroYak_CAF1 3690 91 - 1
---CAGGACGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCGCAACAAAGAAACUAGAUCC-GAAGAUCCCGCCGA
---..((.(((.((((((.....(((((((((((........))))).)))).)).)))))).............((((.-...))))))))).. ( -28.40)
>consensus
___CAGGACGGAGCGGAAGGAUAAGAGCCUGAUGACAGGAUACAUUACGGCUGCUGUUCCACAACAAAGAAACUAGAUCC_GGAGAUCCCCCCGA
.....(((.(((.(...(((((.(((((((((((........))))).)))).))(((((........)))))...)))))...).))).))).. (-21.67 = -23.55 +   1.88) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:26 2006