Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,316,711 – 12,316,806 |
Length | 95 |
Max. P | 0.766382 |
Location | 12,316,711 – 12,316,806 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.87 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -22.98 |
Energy contribution | -23.98 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.88 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12316711 95 + 22224390 ACGGCCAUAAAAAGGAGCGUUGGUUGGAUCGAUCGAUCGAUGGAUCGGCUCAGUUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU (((.((.......))..)))(((((.(((((.((((((....))))))....((((((....)).)))))))))...)))))(((.....))).. ( -25.50) >DroSec_CAF1 18898 95 + 1 ACAGCCAUAAAAAGGAGCGUUGGUUGAAUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU ...(((((......((((((((((...))))))(((((....)))))))))..)))))............((((...)))).(((.....))).. ( -26.60) >DroSim_CAF1 19375 95 + 1 ACAGCCAUAAAAAGGAGCGUUGGUUGAAUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU ...(((((......((((((((((...))))))(((((....)))))))))..)))))............((((...)))).(((.....))).. ( -26.60) >DroEre_CAF1 19301 91 + 1 ACGGCCAUAAAAAGGAGCGUUGGC----UCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU ...(((........((((....))----))....((((....)))))))((((((.((....))......((((...)))).......)))))). ( -28.50) >DroYak_CAF1 18374 87 + 1 ACAGCCAUAAAAAGGAGCGUUGG--------AUCGAUCGAUGGAUCGGCUCAGCUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU ...((((...........((((.--------.((((((....))))))..))))))))............((((...)))).(((.....))).. ( -23.00) >consensus ACAGCCAUAAAAAGGAGCGUUGGUUG_AUCGAUCGAUCGAUGGAUCGGCUCAGGUGGCAUAUGCAUAACCGGUCAAAGACCACAGAGAACCUGAU ...(((((......(((((((((.....)))))(((((....)))))))))..)))))............((((...)))).(((.....))).. (-22.98 = -23.98 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:12 2006