Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,308,474 – 12,308,569 |
Length | 95 |
Max. P | 0.946010 |
Location | 12,308,474 – 12,308,569 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -18.13 |
Consensus MFE | -9.44 |
Energy contribution | -9.60 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -2.78 |
Structure conservation index | 0.52 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12308474 95 - 22224390 UC-AAUCUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCAUUUCC---------------UACAUCUUCCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACCACUAA ((-((.....(((((.......)))))..((--((((((.......((---------------..................))-------......))))))))....))))........ ( -18.09) >DroPse_CAF1 9822 117 - 1 -CAUUUCCCCAUCAUACAUACAAUAUACCCUCAUGAACAUUCACUUGCCAUCUCAUGCAUACAUACUUAUGUACACCAUUCGUGGCGGCUGUUUAUUGUUCAAGAACUUUGACCC--UAA -.............................((.((((((..((.(((((((...(((..(((((....)))))...)))..))))))).)).....)))))).))..........--... ( -19.00) >DroSec_CAF1 10706 96 - 1 UC-AAUCUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCACUUCCUC-------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUGCCAGAACUUUGAACC-CCAA ..-.......(((((.......)))))...(--(((...((((.(((...-------------((((.....((.......))-------......))))...)))...)))).)-))). ( -14.80) >DroSim_CAF1 11221 96 - 1 UC-AGUGUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCACUUCCUC-------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACC-CCAA ((-((.((.((((((.......)))))...(--((((((.......((..-------------..................))-------......)))))))).)).))))...-.... ( -18.77) >DroEre_CAF1 10783 94 - 1 UC-AAUCUCCGCCAUCCAUCCAAUGGCCCAU--GGGACAUUCACUUCC---------------CACAUCUUUCCAGCAUUCGG-------CUUUAUUGUCCCAGAACUUUGAACC-CCAA ((-((..((.(((((.......)))))...(--((((((.........---------------...........(((.....)-------))....)))))))))...))))...-.... ( -16.95) >DroYak_CAF1 10172 94 - 1 UC-AAUCUUCGCCAUCCAUCCAAUGGCCCAU--GGGACAUUCACUUCC---------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACC-CCAA ((-((..((((((((.......)))))...(--((((((.......((---------------..................))-------......))))))))))..))))...-.... ( -21.19) >consensus UC_AAUCUCCGCCAUCCAUCCAAUGGCCCUU__GGGACAUUCACUUCC_______________UACAUCUUUCCAGCAUUCGG_______UUUUAUUGUCCCAGAACUUUGAACC_CCAA ..........(((((.......)))))......((((((.........................................................)))))).................. ( -9.44 = -9.60 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:09 2006