Locus 4734

Sequence ID X_DroMel_CAF1
Location 12,305,017 – 12,305,121
Length 104
Max. P 0.756429
window7764

overview

Window 4

Location 12,305,017 – 12,305,121
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 97.88
Mean single sequence MFE -20.24
Consensus MFE -17.74
Energy contribution -17.70
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.49
SVM RNA-class probability 0.756429
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12305017 104 - 22224390
CUGAAAGACGCCGCACGCGCUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
.((((.(.(((.....))))))))..........(.((((..(((((.............)))))...((((((......))))))...........)))).). ( -18.82)
>DroSec_CAF1 7228 104 - 1
CUGAAAUACGCCGCAAGCGUUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
.((((..(((.(....))))))))..........(.((((..(((((.............)))))...((((((......))))))...........)))).). ( -19.82)
>DroSim_CAF1 7803 104 - 1
CUGAAAUACGCCGCAAGCGUUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
.((((..(((.(....))))))))..........(.((((..(((((.............)))))...((((((......))))))...........)))).). ( -19.82)
>DroEre_CAF1 7232 104 - 1
CGGAAAUACGCCGCAAGUGUUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
..(((((((.......)))))))...........(.((((..(((((.............)))))...((((((......))))))...........)))).). ( -21.12)
>DroYak_CAF1 6696 104 - 1
CUGAAAUACGCCGCAAGUGUUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
.((((((((.......))))))))..........(.((((..(((((.............)))))...((((((......))))))...........)))).). ( -21.62)
>consensus
CUGAAAUACGCCGCAAGCGUUUCACUUUACAACAGAAGACACAAAGAACAAUUAACAUUCUCUUUAAUGAGCUCUUUAAUGGGCUCCAGACACACACGUCUACG
..(((..((((.....)))))))...........(.((((..(((((.............)))))...((((((......))))))...........)))).). (-17.74 = -17.70 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:05 2006