Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,303,942 – 12,304,057 |
Length | 115 |
Max. P | 0.999560 |
Location | 12,303,942 – 12,304,057 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -29.12 |
Energy contribution | -29.32 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.96 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995494 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12303942 115 + 22224390 -GACAUCUUACCACA-ACUGUUGAAUGUACGGAUCUAUAU---GUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGUGUGCCGUGGUUUUUCUUGAUUUUG -..((....(((((.-......(((((((((...(((((.---...)))))))))).))))(((.(((((((((..(....)..))))))))).....))))))))......))...... ( -30.70) >DroSec_CAF1 6200 117 + 1 GGACUUCUUACCACAAACUGUUGAAUGUACGGAUCUAUAU---UUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGUGUGCCGUGGUUUUUCUUGAUUUUG ((((..(..(((((((((.((..((((((((...(((((.---...)))))))))).)))..))....(((....))).....)))))))))..).)).))................... ( -30.30) >DroSim_CAF1 6725 116 + 1 -GACUGCUUACCACAAACUGUUGAAUGUACGGAUCUAUAU---UUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGUGUGCCGUGGUUUUUCUUGAUUUUG -(((..(....((((....((..((((((((...(((((.---...)))))))))).)))..)).(((((((((..(....)..)))))))))))))....)..)))............. ( -30.40) >DroEre_CAF1 6113 118 + 1 -GACUUCUCACCACA-ACUGUUGAAUGUAGGAAUCUAUAUUAUUUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGUGUGCCGUGGUUUUUCUUGAUUUUG -........(((((.-(((((..(((((((....)))))))......))))).........(((.(((((((((..(....)..))))))))).....)))))))).............. ( -30.40) >DroYak_CAF1 5582 118 + 1 -GACUUCUCACCACA-ACUGUUGAAUGUACGAGUCUAUAUUGUUUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGAGUGCCGUGGUUUUUCUUGAUUUUG -........(((((.-(((((..((((((((...(((((.......)))))))))).)))..)).(((((((((..(....)..)))))))))..)))...))))).............. ( -30.30) >consensus _GACUUCUUACCACA_ACUGUUGAAUGUACGGAUCUAUAU___UUUUAUAGUGUGCUAUUUGGCUGACCACAGGUGUGAAUGUGUUUGUGGUUUGUGUGCCGUGGUUUUUCUUGAUUUUG .........(((((........(((((((((...(((((.......)))))))))).))))(((.(((((((((..(....)..))))))))).....)))))))).............. (-29.12 = -29.32 + 0.20)
Location | 12,303,942 – 12,304,057 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -19.53 |
Consensus MFE | -18.44 |
Energy contribution | -18.44 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.94 |
SVM decision value | 3.72 |
SVM RNA-class probability | 0.999560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12303942 115 - 22224390 CAAAAUCAAGAAAAACCACGGCACACAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAC---AUAUAGAUCCGUACAUUCAACAGU-UGUGGUAAGAUGUC- ..............((((((((......((((((..............))))))..((......))...(((((...---.)))))................))-))))))........- ( -20.04) >DroSec_CAF1 6200 117 - 1 CAAAAUCAAGAAAAACCACGGCACACAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAA---AUAUAGAUCCGUACAUUCAACAGUUUGUGGUAAGAAGUCC ...................(((......(((((((((....((((....))))...((......))...(((((...---.)))))................))))))))).....))). ( -19.40) >DroSim_CAF1 6725 116 - 1 CAAAAUCAAGAAAAACCACGGCACACAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAA---AUAUAGAUCCGUACAUUCAACAGUUUGUGGUAAGCAGUC- ..............((((((((......((((((..............))))))..)))..........(((((...---.)))))....................)))))........- ( -18.74) >DroEre_CAF1 6113 118 - 1 CAAAAUCAAGAAAAACCACGGCACACAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAAAUAAUAUAGAUUCCUACAUUCAACAGU-UGUGGUGAGAAGUC- ..............((((((((......((((((..............))))))..((......))...(((((.......)))))................))-))))))........- ( -19.74) >DroYak_CAF1 5582 118 - 1 CAAAAUCAAGAAAAACCACGGCACUCAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAAACAAUAUAGACUCGUACAUUCAACAGU-UGUGGUGAGAAGUC- ..............((((((((......((((((..............))))))..((......))...(((((.......)))))................))-))))))........- ( -19.74) >consensus CAAAAUCAAGAAAAACCACGGCACACAAACCACAAACACAUUCACACCUGUGGUCAGCCAAAUAGCACACUAUAAAA___AUAUAGAUCCGUACAUUCAACAGU_UGUGGUAAGAAGUC_ ..............((((((((......((((((..............))))))..)))..........(((((.......)))))....................)))))......... (-18.44 = -18.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:04 2006