Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,303,114 – 12,303,249 |
Length | 135 |
Max. P | 0.985947 |
Location | 12,303,114 – 12,303,212 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 97.75 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -19.26 |
Energy contribution | -19.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.75 |
Structure conservation index | 0.95 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12303114 98 - 22224390 AAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA ..............(((((((((...(((.((((.....)))).))))))))))))((((.((((.(((((..(....)..))))))))).))))... ( -22.10) >DroSec_CAF1 5390 98 - 1 AAAUACUUAUAACAUUUCGCCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA ................((..((((..(((.((((.....)))).)))..)))).))((((.((((.(((((..(....)..))))))))).))))... ( -19.70) >DroSim_CAF1 5920 98 - 1 AAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA ..............(((((((((...(((.((((.....)))).))))))))))))((((.((((.(((((..(....)..))))))))).))))... ( -22.10) >DroEre_CAF1 5302 97 - 1 -AAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGCAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA -((((((.((((..(((((((((...(((.((((.....)))).))))))))))))...))))))))))............................. ( -19.10) >DroYak_CAF1 4803 97 - 1 -AAUACUUAUAACAUUUGGGCAAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA -.............(((.(((((...(((.((((.....)))).)))))))).)))((((.((((.(((((..(....)..))))))))).))))... ( -18.60) >consensus AAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGAGUUAUUAUAAAUCUAUUAUACAUA ..............(((((((((...(((.((((.....)))).))))))))))))((((.((((.(((((..(....)..))))))))).))))... (-19.26 = -19.70 + 0.44)
Location | 12,303,138 – 12,303,249 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -20.07 |
Energy contribution | -20.23 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.13 |
Mean z-score | -1.46 |
Structure conservation index | 0.80 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12303138 111 - 22224390 AGAUGGAUGAGUGACGUUGGUAGCAGAAAAUAAAUAUAAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGA .....((..(((..(((((((((..((((.....(((((....)))))...))))(((((....))))).)))))))))...)))..))(.((((((....)))))).).. ( -25.90) >DroSec_CAF1 5414 111 - 1 AGAUGGAUGAGUGACGUUGGUAGCAGAAAAUAAAUAUAAAUACUUAUAACAUUUCGCCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGA ..((.((((.....)))).))...............((((((((.((((...(((..((((..(((.((((.....)))).)))..)))).)))..))))))))))))... ( -21.90) >DroSim_CAF1 5944 111 - 1 AGAUGGAUGAGUGACGUUGGUAGCAGAAAAUAAAUAUAAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGA .....((..(((..(((((((((..((((.....(((((....)))))...))))(((((....))))).)))))))))...)))..))(.((((((....)))))).).. ( -25.90) >DroEre_CAF1 5326 105 - 1 AGAUGGAUGGGUGACGUUAGUGGCAGAAAAUA------AAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGCAUUAUAGUAUUUACGA ..........((.((....)).))......((------((((((.((((..(((((((((...(((.((((.....)))).))))))))))))...))))))))))))... ( -25.40) >DroYak_CAF1 4827 105 - 1 AGAUGGAUGAGUGACGUUGGCAGCAGAAAAUA------AAUACUUAUAACAUUUGGGCAAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGA .....((..(((..(((((((((((((..(((------(....))))....))))(((((....))))).)))))))))...)))..))(.((((((....)))))).).. ( -26.30) >consensus AGAUGGAUGAGUGACGUUGGUAGCAGAAAAUAAAUAUAAAUACUUAUAACAUUUCGGCGAUUUGUUGCCAUUGCCAAUGGGAAUUUGUCGAGAGUAUUAUAGUAUUUACGA .....((..(((..(((((((((..((((......................))))(((((....))))).)))))))))...)))..))(.((((((....)))))).).. (-20.07 = -20.23 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:02 2006