Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,297,002 – 12,297,100 |
Length | 98 |
Max. P | 0.838270 |
Location | 12,297,002 – 12,297,100 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 86.80 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -20.84 |
Energy contribution | -20.90 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.23 |
Mean z-score | -2.15 |
Structure conservation index | 0.71 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12297002 98 + 22224390 AGAAAAUUGCAAUUUCGCUCAUCUCUAUAGGGAUGGAAGAACUGCUAGUUUGCGCAUAUCGAUAAGCCAUCGAUAGUCGACGGAUGGGCUA-AGCAGUG .....(((((...(((..(((((((....)))))))..)))..(((.(((((((..(((((((.....)))))))..)).))))).)))..-.))))). ( -30.00) >DroSec_CAF1 6501 98 + 1 AGAAAAUUGCAAUUUCGCUCAUCUCUAUAGGGAUGGAAGAACUGCUAGGUUGCGCUUAUCGAUAGGCUAUCGAUAGGCGACGAGUCGGCUA-AGCAGUG .....(((((...(((..(((((((....)))))))..)))..((..(.(((((((((((((((...)))))))))))).))).)..))..-.))))). ( -37.40) >DroEre_CAF1 7017 99 + 1 AGAAAAUUGCAAUUUUGCUCAUCUCUAUAGGGAUGGAAUAACUGCUAAGUUGCGCCUAUCGAUUAGCUAUCGAUGACUGACAAAUCGGCCAAAACAGUG ........(((((((.(((((((((....))))))).......)).)))))))((((((((((.....)))))))...((....))))).......... ( -24.31) >DroYak_CAF1 5881 98 + 1 AGAAAAUUGCAAUUUUGCUCAUCUCUAUAGGGAUGGAAGAACUGCUAGGCUGCGCCUAUCGAUUAGCUAUCGAUUUCCGACUGAUCGGCCA-UACAGUG ........(((.((((..(((((((....))))))).)))).)))(((((...)))))((((((((...(((.....)))))))))))...-....... ( -26.20) >consensus AGAAAAUUGCAAUUUCGCUCAUCUCUAUAGGGAUGGAAGAACUGCUAGGUUGCGCCUAUCGAUAAGCUAUCGAUAGCCGACGAAUCGGCCA_AACAGUG .....(((((...(((..(((((((....)))))))..)))..((..(.(((((..(((((((.....)))))))..)).))).)..))....))))). (-20.84 = -20.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:57 2006