Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,387,592 – 1,387,690 |
Length | 98 |
Max. P | 0.650696 |
Location | 1,387,592 – 1,387,690 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.57 |
Mean single sequence MFE | -31.33 |
Consensus MFE | -19.43 |
Energy contribution | -20.32 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.10 |
Mean z-score | -1.78 |
Structure conservation index | 0.62 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1387592 98 - 22224390 AGACGAAGGGAUCCGAUGCACU------------CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCAACAGGCG-CCACC--------CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA ....(((((((..(((((....------------)))))..........)))))))....((((....))))-.....--------...(((.(((((............)))))))). ( -29.00) >DroSec_CAF1 15012 98 - 1 AGACGAAGGGAUCCGAUGCACU------------CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCACCAGGCG-CCACC--------CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA ....(((((((..(((((....------------)))))..........)))))))....((((....))))-.....--------...(((.(((((............)))))))). ( -29.00) >DroEre_CAF1 13857 119 - 1 AGAUGGAGAGCUCCGAUGCACUCGGUGCUCAGUGCAGUGCCUUCUUAUUUCCUUUCCAACCGCCAACAGGCAACCUCCGCCAACCCCCCACCUCCUGGGCAGCCCCAUCAGCAGGGGCA .(.((((((((.((((.....)))).))))...............................(((....)))....)))).).....((((.....))))..(((((.......))))). ( -36.00) >consensus AGACGAAGGGAUCCGAUGCACU____________CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCAACAGGCG_CCACC________CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA ....(((((....(((((................)))))))))).................(((....)))..................(((.(((((............)))))))). (-19.43 = -20.32 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:24 2006