Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,295,057 – 12,295,157 |
Length | 100 |
Max. P | 0.911367 |
Location | 12,295,057 – 12,295,157 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -37.71 |
Consensus MFE | -23.29 |
Energy contribution | -23.18 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -2.09 |
Structure conservation index | 0.62 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12295057 100 - 22224390 AA--UU-UACAGCACGCCCCAGGAAUUCCGAAGGUUCUUGUCGGGAAUCGCCUGCACUUGGCCUUCAAGCGACAGGUGGCGGCCAAACAGGCCGAGACCUACG ..--..-.......(((....((....))(((((((...((((((.....)))).))..)))))))..)))..((((..(((((.....)))))..))))... ( -36.50) >DroVir_CAF1 419 100 - 1 UA--UU-UGUAGCAUGCGCCCGGCAUACCCAAAGUGCUUGUAGGCAAUCGCUUGCAUUUGGCCUACAAACGUCAGGUGGCCGCCAAACAGGCGGAGACCUACG ..--((-(((((.....(((.(((((.......)))))(((((((....)))))))...))))))))))(((.((((..(((((.....)))))..))))))) ( -38.50) >DroGri_CAF1 4820 100 - 1 UG--UU-UGCAGCAUGCACCUGGCAUACCCAAAGUGCUCGUCGGCAAUCGUCUCCAUUUGGCGUACAAGCGUCAGGUGGCCGCCAAACAGGCGGAGACGUAUG ..--.(-(((.((..((((.(((.....)))..))))..))..)))).((((((((((((((((....)))))))))))(((((.....)))))))))).... ( -40.20) >DroWil_CAF1 321 100 - 1 AU--UG-CACAGCAUGCUCCUGGUAUACCCAAGGUCCUGGUAGGCAACCGUCUACAUUUGGCCUUCAAACGUCAGGUGGCUGCCAAGCAAGCCGAGUCCUAUG .(--((-(...(((.((((((((..(....((((((...((((((....))))))....))))))...)..))))).))))))...))))............. ( -31.00) >DroMoj_CAF1 5074 101 - 1 UA--UUCUACAGCAUGCGCCUGGCAUACCCAAGGUGCUUGUGGGCAAUCGCUUACAUUUGGCCUACAAGCGCCAGGUGGCUGCCAAGACGGCGGAAACCUAUG ..--.........((((.....))))......(((((((((((((...............)))))))))))))((((..(((((.....)))))..))))... ( -41.66) >DroAna_CAF1 5204 102 - 1 UAUUUU-UCUAGCACGCCCCUGGUAUUCCAAAAGUGUUGGUGGGCAACCGGCUGCACUUGGCUUUUAAGCGUCAGGUGGCGGCCAAACAGGCCGAGACCUACG ......-........(((..(((....))).((((((.(.(((....))).).))))))))).......(((.((((..(((((.....)))))..))))))) ( -38.40) >consensus UA__UU_UACAGCAUGCCCCUGGCAUACCCAAAGUGCUUGUAGGCAAUCGCCUGCAUUUGGCCUACAAGCGUCAGGUGGCCGCCAAACAGGCCGAGACCUACG ..........(((((......((....))....))))).(((((..........((((((((........)))))))).(((((.....)))))...))))). (-23.29 = -23.18 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006