Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,291,870 – 12,291,965 |
Length | 95 |
Max. P | 0.919546 |
Location | 12,291,870 – 12,291,965 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.86 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -18.32 |
Energy contribution | -19.72 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.24 |
Mean z-score | -3.06 |
Structure conservation index | 0.68 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919546 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12291870 95 + 22224390 GGCAAAUGCAAAUGAGUCCGGUGGAUAAAAAAAAAAAAUGGGAAACAUAGCAGUUCCAUAAUUGGGACC-AGCCGCCGA-------AAUUAAUCCGCCGGGCA .((....))......(((((((((((..............(....)...((.((((((....)))))).-.))......-------.....))))))))))). ( -32.50) >DroSec_CAF1 1451 89 + 1 GGUAAAUGCAAAUGAGUCCGGUGGA-----AAA-AAAAUGGGAAACAUAGCAGUUCCAUAAUUGGGACC-AGCCGCCGA-------AAUUAAUCCGCCGGGCA ...............((((((((((-----...-......(....)...((.((((((....)))))).-.))......-------......)))))))))). ( -30.20) >DroSim_CAF1 1761 90 + 1 GGCAAAUGCAAAUGAGUCCGGUGGA-----AAAAAAAAUGGGAAACAUAGCAGUUCCAUAAUUGGGACC-AGCCGCCGA-------AAUUAAUCCGCCGGGCA .((....))......((((((((((-----..........(....)...((.((((((....)))))).-.))......-------......)))))))))). ( -31.50) >DroEre_CAF1 1560 88 + 1 GGCAAAUGCAAAUGAGUGCGGUGGA-----AA--GAAAUGGGAAAAAUAGCAGUUCCAUAAUUGGGACC-AGCCGCCGA-------AAUUAAUCCGUCGGGCA .((....))......((.((..(((-----..--....(.((.......((.((((((....)))))).-.))..)).)-------......)))..)).)). ( -20.80) >DroYak_CAF1 1394 88 + 1 GGCAAAUGCAAAUGAGUCCGGUGGA-----AA--AAAAUGGGAAAAAUAGCAGUUCCAUAAUUGGAACC-GGCCGCCGA-------AAUUAAUCCGCCGGGCA .((....))......((((((((((-----..--..................((((((....))))))(-((...))).-------......)))))))))). ( -30.60) >DroPer_CAF1 1478 89 + 1 GGGAAAUGCAAAUGAGUUCAACCCA-----------AAAGGCAAG---CGCAUUUCCAUAAUUAGGCCAAAACCAACGACUCUGUUUAUUGAUCCGCCAGGCA .((((((((...((....))..((.-----------...))....---.))))))))........(((......((((....))))...((......))))). ( -16.00) >consensus GGCAAAUGCAAAUGAGUCCGGUGGA_____AA__AAAAUGGGAAACAUAGCAGUUCCAUAAUUGGGACC_AGCCGCCGA_______AAUUAAUCCGCCGGGCA .((....))......((((((((((.............(.((..........((((((....)))))).......)).).............)))))))))). (-18.32 = -19.72 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:55 2006