Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,291,552 – 12,291,653 |
Length | 101 |
Max. P | 0.668198 |
Location | 12,291,552 – 12,291,653 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -14.73 |
Consensus MFE | -13.50 |
Energy contribution | -13.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | 0.03 |
Structure conservation index | 0.92 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12291552 101 + 22224390 UUUUAACUUUUUAUAUUUUCAAUUUGAUUUUAAUGAUGAUGUUUUGUGCACUAUGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU .....((.....(((((.(((............))).)))))...)).......(((.....)))..(((((((..((.(((....))).)).))))))). ( -14.80) >DroSec_CAF1 1156 78 + 1 GUUUAACUUUUUAUAUUUUGAAACUGAUUU-----------------------UGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU .........................((.((-----------------------((.....)))).))(((((((..((.(((....))).)).))))))). ( -14.10) >DroYak_CAF1 1075 92 + 1 UUUGAACUUUUAAUAUUUAAAAACUGAUUUGAAA-----UUUUU----CUUAAUGUCGAGAAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU ...............((((((......)))))).-----.((((----(((......)))))))...(((((((..((.(((....))).)).))))))). ( -15.30) >consensus UUUUAACUUUUUAUAUUUUAAAACUGAUUU_AA______U_UUU____C___AUGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU ......................................................(((.....)))..(((((((..((.(((....))).)).))))))). (-13.50 = -13.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:54 2006