Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,281,516 – 12,281,614 |
Length | 98 |
Max. P | 0.953048 |
Location | 12,281,516 – 12,281,614 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 65.10 |
Mean single sequence MFE | -39.67 |
Consensus MFE | -17.98 |
Energy contribution | -22.23 |
Covariance contribution | 4.25 |
Combinations/Pair | 1.21 |
Mean z-score | -2.22 |
Structure conservation index | 0.45 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12281516 98 + 22224390 GGUCACCAAGGCUGGUAGCUCCAAUGCCACAACGGUGC--UGGAUUCAUCCAAUUCCAGCGGCUCAAAUGCCGGAACACU-GAGUGUUCCCAGUGCUGGUA .(..((((....))))..)((((..(((.....)))..--))))...........((((((((......)))(((((((.-..)))))))....))))).. ( -35.80) >DroPse_CAF1 43227 88 + 1 --CCAGCAAGAGAAGAACUGACGAGGCCG-AUGGAACGAC----ACCGGCUGCCGCU----GCU-GGGGGCAGCAGCAGUACAGUCACCUCAGCGGCGAC- --...((..(((..((.((((((.(((((-.((......)----).)))))..)(((----(((-(....))))))).)).)))))..)))....))...- ( -32.70) >DroSec_CAF1 26790 98 + 1 GGCCACCAAGGGUGGUAGCUCCAAUGCCACAACGGUGC--UGGAUUCGCCCAGUUCCAGCGGCUCAAAUGCCGGAACACU-GGGUGUUCCCAGUGCUGGUA .((((((...)))))).((......)).....(((..(--(((...((((((((.....((((......))))....)))-)))))...))))..)))... ( -44.70) >DroEre_CAF1 24500 97 + 1 GGUCACCAAGGGUGGUAGCUCCAGUGCCGCAACGGUGC--UGGAUUCGCCCAGUUCCAGCGGCUCGAAUGCCGGAACACU-CAGUGUUCCCAGUGGUGGU- ..((((((.((((((....(((((..(((...)))..)--)))).)))))).........(((......)))(((((((.-..)))))))...)))))).- ( -45.50) >consensus GGCCACCAAGGGUGGUAGCUCCAAUGCCACAACGGUGC__UGGAUUCGCCCAGUUCCAGCGGCUCAAAUGCCGGAACACU_CAGUGUUCCCAGUGCUGGU_ .........((((((....((((.((((.....))))...)))).))))))....((((((((......)))(((((((....)))))))....))))).. (-17.98 = -22.23 + 4.25)
Location | 12,281,516 – 12,281,614 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 65.10 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -14.76 |
Energy contribution | -17.82 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.17 |
Mean z-score | -2.29 |
Structure conservation index | 0.37 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12281516 98 - 22224390 UACCAGCACUGGGAACACUC-AGUGUUCCGGCAUUUGAGCCGCUGGAAUUGGAUGAAUCCA--GCACCGUUGUGGCAUUGGAGCUACCAGCCUUGGUGACC ..(((((....(((((((..-.)))))))(((......))))))))..(((((....))))--)(((((....(((..(((.....)))))).)))))... ( -39.20) >DroPse_CAF1 43227 88 - 1 -GUCGCCGCUGAGGUGACUGUACUGCUGCUGCCCCC-AGC----AGCGGCAGCCGGU----GUCGUUCCAU-CGGCCUCGUCAGUUCUUCUCUUGCUGG-- -....((((.((((.(((((.(((((((((((....-.))----)))))))((((((----(......)))-))))...)))))))..))))..)).))-- ( -39.40) >DroSec_CAF1 26790 98 - 1 UACCAGCACUGGGAACACCC-AGUGUUCCGGCAUUUGAGCCGCUGGAACUGGGCGAAUCCA--GCACCGUUGUGGCAUUGGAGCUACCACCCUUGGUGGCC .....((((((((....)))-)))))((((((......)))((((.(((.((((.......--)).))))).))))...)))(((((((....))))))). ( -42.60) >DroEre_CAF1 24500 97 - 1 -ACCACCACUGGGAACACUG-AGUGUUCCGGCAUUCGAGCCGCUGGAACUGGGCGAAUCCA--GCACCGUUGCGGCACUGGAGCUACCACCCUUGGUGACC -..(((((..(((.....((-.((((((((((......)))((((.(((.((((.......--)).))))).))))...))))).))))))).)))))... ( -38.00) >consensus _ACCACCACUGGGAACACUC_AGUGUUCCGGCAUUCGAGCCGCUGGAACUGGGCGAAUCCA__GCACCGUUGCGGCAUUGGAGCUACCACCCUUGGUGACC ..(((((....(((((((....)))))))(((......))))))))...(((.....((((.....((.....))...))))....)))............ (-14.76 = -17.82 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:53 2006