Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,268,642 – 12,268,754 |
Length | 112 |
Max. P | 0.997933 |
Location | 12,268,642 – 12,268,754 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -20.58 |
Energy contribution | -22.33 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.15 |
Mean z-score | -2.46 |
Structure conservation index | 0.64 |
SVM decision value | 2.96 |
SVM RNA-class probability | 0.997933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12268642 112 + 22224390 AGGUUUCUUCACCCUCAUCAACGUCAUCCCCACCCCCUUUUCAACCAUUUUUCAAUGUCAUUCCGCAUACGUGACACACUUCCCUAAGGGGAGAAGGGGGGAGGGGGGGAUC .(((......))).........(((.(((((..(((((((((.............((((((.........))))))....((((....)))))))))))))..)))))))). ( -39.20) >DroSec_CAF1 15017 107 + 1 AGGUUUCUUCACCCUCAUCAACGUCUGCCCCACCCCCUUU-CCACCAUUUUUCAAUGUCAUUUCGCAUACGUGACACACUUCCCUAGGGCG----GGGGGAAAGGGGGGAUC .(((......)))...................((((((((-((.((.........((((((.........))))))..((.((....)).)----))))))))))))).... ( -33.30) >DroYak_CAF1 3648 95 + 1 AGGUUUCCCCACC--CAUCAAAGCCUCUACCUCCUCCUCU------UUUAUUCAAUGUCAUUUCGCAUACGUGACACAAUUUCCUCAGGAGGG---------AGGGGGGAUC .(((..((((.((--(........................------.........((((((.........)))))).....(((...))))))---------.))))..))) ( -24.70) >consensus AGGUUUCUUCACCCUCAUCAACGUCUCCCCCACCCCCUUU_C_ACCAUUUUUCAAUGUCAUUUCGCAUACGUGACACACUUCCCUAAGGAG_G__GGGGG_AAGGGGGGAUC .(((......)))...................(((((((((((.((.........((((((.........))))))...(((((...)))))...)).)))))))))))... (-20.58 = -22.33 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:49 2006