Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,264,482 – 12,264,601 |
Length | 119 |
Max. P | 0.573533 |
Location | 12,264,482 – 12,264,601 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -34.28 |
Consensus MFE | -23.32 |
Energy contribution | -24.28 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.68 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12264482 119 + 22224390 GUGUGGCAAUAUGGUCAA-GCAUUUUCAUUAUUGUCUGGCCAACUCUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC ....((((((((((....-......))).))))))).((((((((((((((((((...((((......(((((((.........)))))))..))))...)))))))))).))).))))) ( -38.30) >DroPse_CAF1 24435 118 + 1 GUGUGGCAAUAUGGCCAAGGCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGUAGUGUGGCC ....(((.(((((((((.((((..........))))))))).((--(((((((((...((((....((.....)).......((...))....))))...))))))))))).)))).))) ( -34.30) >DroSec_CAF1 10985 94 + 1 GUGUGGCAAUAUGG------------------------GCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCGGCACACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC .............(------------------------((((((--(((((((((...((((......(((((((.........)))))))..))))...)))))))))))....))))) ( -29.80) >DroEre_CAF1 9123 117 + 1 GUGUGGCAAUAUGGGCAA-GCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUAAGGCC ....(((....(((.((.-.((..........))..)).)))((--(((((((((...((((......(((((((.........)))))))..))))...)))))))))))......))) ( -34.70) >DroPer_CAF1 23458 118 + 1 GUGUGGCAAUAUGGCCAAGGCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGUAGUGUGGCC ....(((.(((((((((.((((..........))))))))).((--(((((((((...((((....((.....)).......((...))....))))...))))))))))).)))).))) ( -34.30) >consensus GUGUGGCAAUAUGGCCAA_GCAUUUUCAUUAUUGUCUGGCCAAC__UGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC ....(((.((((((((...(((..........)))..)))).....(((((((((...((((......(((((((.........)))))))..))))...)))))))))...)))).))) (-23.32 = -24.28 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:47 2006