Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,264,131 – 12,264,224 |
Length | 93 |
Max. P | 0.998214 |
Location | 12,264,131 – 12,264,224 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.74 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -25.43 |
Energy contribution | -25.75 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.42 |
Structure conservation index | 0.68 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12264131 93 - 22224390 ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGUCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------GAGAUUGCAUGCUGCAAG .(....)((((((((((((((.((((........)))).))))))))))))))...((.(((((((.........---------------------------..)).))))).))..... ( -30.40) >DroPse_CAF1 23890 119 - 1 AUGUGC-GGUUCGUGUGGCAUGUAACAAAUGCCGGCUGGAUGCCACGCGAGUUAUGGGAACGCAUCAAGGUGCUGCCUGGCCUGCACUGGCCCUGUCCCUAGCCGCUUGCAUGCUGCAUA .(((((-(((..(((((((((.......)))))(((.....)))..(((.((((.((((..((((....)))).....((((......))))...)))))))))))..)))))))))))) ( -49.80) >DroSec_CAF1 10635 93 - 1 ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGUCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------GAGAUUGCAUGCUGCAAG .(....)((((((((((((((.((((........)))).))))))))))))))...((.(((((((.........---------------------------..)).))))).))..... ( -30.40) >DroEre_CAF1 8765 92 - 1 ACGAAAGAA-UCGUGUGGCAUCCAACAAAUGCCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------AAGAUUGCAUGCUGCAAG .(....)..-(((((((((((.((((........)))).)))))))))))..........((((.((.....(((---------------------------(...)))).)).)))).. ( -27.60) >DroPer_CAF1 22845 119 - 1 AUGUGC-GGUUCGUGUGGCAUGUAACAAAUGCCGGCUGGAUGCCACGCGAGUUAUGGGAACGCAUCAAGGUGCUGCCUGGCCUGCACUGGCCCUGUCCCUAGCCGCUUGCAUGCUGCAUA .(((((-(((..(((((((((.......)))))(((.....)))..(((.((((.((((..((((....)))).....((((......))))...)))))))))))..)))))))))))) ( -49.80) >consensus ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGCCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG___________________________CAGAUUGCAUGCUGCAAG .......((((((((((((((.((((........)))).))))))))))))))...((.(((((..............((((......))))...............))))).))..... (-25.43 = -25.75 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:46 2006