Locus 472

Sequence ID X_DroMel_CAF1
Location 1,385,616 – 1,385,728
Length 112
Max. P 0.500000
window725

overview

Window 5

Location 1,385,616 – 1,385,728
Length 112
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 84.56
Mean single sequence MFE -52.50
Consensus MFE -36.53
Energy contribution -38.02
Covariance contribution 1.50
Combinations/Pair 1.14
Mean z-score -1.43
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1385616 112 + 22224390
CGAUGGCGCU---GUUGUUGUUCGCCGGAACCUGAGCCUCCUCCUCGCAGGCGGUGGGUCCAGUUGGCCAGCACUGAAUGGGCCGAAAGUAGGGGGAGGUGGAGC-GGGCGGUGAG
(((..((...---))..))).((((((...((((..((.(((((((....((..(.((((((.(..(......)..).)))))).)..))..))))))).))..)-))))))))). ( -49.60)
>DroSec_CAF1 13021 115 + 1
CGAUGGCGCUGCUGUUGUUGUUCGCCGGAACCUGAGCCUCCUCCUCGCAGGCGCUGGGGCCAGUUGGCCUGCACUGAAUGGGCCGAAAGUAGGGGGAGGUGGCGC-GGGCGGUGAG
(((..(((....)))..))).((((((...((((.(((.(((((((((((((((((....))))..))))))...........(....)...))))))).))).)-))))))))). ( -56.80)
>DroSim_CAF1 12746 115 + 1
CGAUGGCGCUGCUGUUGUUGUUCGCCGGAACCUGAGCCUCCUCCUCGCAGGCGCUGGGGCCAGUUGGCCUGCACUGAAUGGGCCGAAAGUAGGGGGAGGUGGGGC-GGGCGGUGAG
(((..(((....)))..))).((((((...((((.((((((((((.((((((((((....))))..))))))...........(....).))))))))))....)-))))))))). ( -53.90)
>DroYak_CAF1 1285 106 + 1
UGCUGCUGUUGUUGAUGUUGUUCACCGGCUCCUCAGCCUC---UUCGCAGGCGGUGGGGCCAGUUGGCCUGCACUGAGUGGGUCGAAAG-------GGUUGGGGCUGGGCGGUGGG
..(..((((...(((......)))(((((.((.(((((..---((((((..((((((((((....))))).)))))..))...))))..-------))))))))))))))))..). ( -49.70)
>consensus
CGAUGGCGCUGCUGUUGUUGUUCGCCGGAACCUGAGCCUCCUCCUCGCAGGCGCUGGGGCCAGUUGGCCUGCACUGAAUGGGCCGAAAGUAGGGGGAGGUGGGGC_GGGCGGUGAG
(((((((......))))))).((((((...(((..((((((((((.((((((((((....))))..))))))...........(....).))))))))))......))))))))). (-36.53 = -38.02 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:23 2006