Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,251,376 – 12,251,487 |
Length | 111 |
Max. P | 0.825186 |
Location | 12,251,376 – 12,251,487 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 99.10 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -26.79 |
Energy contribution | -26.60 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.08 |
Structure conservation index | 1.01 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12251376 111 + 22224390 CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUGGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU .......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60) >DroSec_CAF1 19410 111 + 1 CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU .......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60) >DroEre_CAF1 14661 110 + 1 CCC-AUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU ...-...((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60) >DroYak_CAF1 7803 111 + 1 CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU .......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60) >consensus CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU .......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... (-26.79 = -26.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:40 2006