Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,250,260 – 12,250,359 |
Length | 99 |
Max. P | 0.834141 |
Location | 12,250,260 – 12,250,359 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -35.27 |
Consensus MFE | -19.65 |
Energy contribution | -20.43 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -2.79 |
Structure conservation index | 0.56 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12250260 99 + 22224390 CCAGGCCCCAAGAAAAAAUGGGGAAUCUUUUCUCUGUUUUUUUUU----UGCACUUCUU----------UUUUUUUUGGUGGGGUGAUGGGGUAGGUGGGGCGCCGCACUUGC (((.(((((((((((((((((((((....))))))))))))))))----...(((....----------........))))))))..))).(((((((.(....).))))))) ( -35.10) >DroSec_CAF1 18292 99 + 1 CCAG-CCCCAAGAAAAAAUGGGGAAUCUUUUCUCUGCUUCUUUUU----U-UACUUCUU--------CUUUUUUUUUGGUGGGGUGAAGGGGUAGGUGGGGCGCUGCACUUGC ...(-(((((((((((.((.....)).))))))((((((((....----(-((((((..--------((........)).))))))))))))))).))))))........... ( -28.80) >DroEre_CAF1 13520 110 + 1 CCAG-CCCCAAGAAAAAAUGGGGAAUCUUUCCUCUGCUCUUUUUUCACUUCCACUUCCACUUCCCCCCUUUUUUUUUGGUGGGU--GAGGGGUAGGUGGUGGGCUGCACUUGC .(((-(((...(((((((.(((((.....))))).....)))))))....((((((((.(((((((((.........)).))).--)))))).)))))).))))))....... ( -41.90) >consensus CCAG_CCCCAAGAAAAAAUGGGGAAUCUUUUCUCUGCUUUUUUUU____U_CACUUCUU________CUUUUUUUUUGGUGGGGUGAAGGGGUAGGUGGGGCGCUGCACUUGC ((...(((((........)))))...((((.(((..((.......................................))..))).))))))(((((((.(....).))))))) (-19.65 = -20.43 + 0.78)
Location | 12,250,260 – 12,250,359 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -15.20 |
Energy contribution | -14.76 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.58 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12250260 99 - 22224390 GCAAGUGCGGCGCCCCACCUACCCCAUCACCCCACCAAAAAAAA----------AAGAAGUGCA----AAAAAAAAACAGAGAAAAGAUUCCCCAUUUUUUCUUGGGGCCUGG .......(((.(((((................(((.........----------.....)))..----...........((((((((((.....)))))))))))))))))). ( -20.54) >DroSec_CAF1 18292 99 - 1 GCAAGUGCAGCGCCCCACCUACCCCUUCACCCCACCAAAAAAAAAG--------AAGAAGUA-A----AAAAAGAAGCAGAGAAAAGAUUCCCCAUUUUUUCUUGGGG-CUGG ((....))...(((((...(((..((((.................)--------)))..)))-.----...........((((((((((.....))))))))))))))-)... ( -22.43) >DroEre_CAF1 13520 110 - 1 GCAAGUGCAGCCCACCACCUACCCCUC--ACCCACCAAAAAAAAAGGGGGGAAGUGGAAGUGGAAGUGAAAAAAGAGCAGAGGAAAGAUUCCCCAUUUUUUCUUGGGG-CUGG .......((((((.((((...((.((.--.(((.((.........)))))..)).))..))))................((((((((((.....)))))))))).)))-))). ( -35.40) >consensus GCAAGUGCAGCGCCCCACCUACCCCUUCACCCCACCAAAAAAAAAG________AAGAAGUG_A____AAAAAAAAGCAGAGAAAAGAUUCCCCAUUUUUUCUUGGGG_CUGG ((....)).........((..((((..................................((...............)).((((((((((.....))))))))))))))...)) (-15.20 = -14.76 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006