Locus 4711

Sequence ID X_DroMel_CAF1
Location 12,250,150 – 12,250,249
Length 99
Max. P 0.842213
window7732

overview

Window 2

Location 12,250,150 – 12,250,249
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 99.49
Mean single sequence MFE -29.85
Consensus MFE -29.85
Energy contribution -29.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 1.00
SVM decision value 0.76
SVM RNA-class probability 0.842213
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12250150 99 + 22224390
UGCGGGGCAAAGGCGGUGGCAGAUUGCAUCGUAUGUUGUUUUAUGCGUAUGAUAUUUUGCCAGGCCAAAGUUAUGAGUUCUAUAAGGAAGCUGGCAAAA
(((.((.(...(((..(((((((....(((((((((........)))))))))..))))))).)))...........((((....))))))).)))... ( -29.40)
>DroSec_CAF1 18182 99 + 1
UGCGGGGCAAAGGCGGUGGCAGAUUGCAUCGUAUGUUGUUUUAUGCGUAUGAUAUUUUGCCAGGCCAAAGUUAUGAGUUCUAUAAGGAAGCUGGCAAAA
(((.((.(...(((..(((((((....(((((((((........)))))))))..))))))).)))...........((((....))))))).)))... ( -29.40)
>DroEre_CAF1 13410 99 + 1
UGCGGGGCAAAGGCGGUGGCAGAUUGCAUCGUAUGUUGUUUUAUGCGUAUGAUAUUUUGCCAGGCCAAAGUUAUGAGUUCUAUAAGGAAGCUGGCAAAA
(((.((.(...(((..(((((((....(((((((((........)))))))))..))))))).)))...........((((....))))))).)))... ( -29.40)
>DroYak_CAF1 6610 99 + 1
UGCGGGGCAAAGGCGGUGGCAGAUUGCAUCGUAUGUUGUUUUAUGCGUAUGAUAUUUUGCCAAGCCAAAGUUAUGAGUUCUAUAAGGAAGCUGGCAAAA
(((.((.(...(((..(((((((....(((((((((........)))))))))..))))))).)))...........((((....))))))).)))... ( -31.20)
>consensus
UGCGGGGCAAAGGCGGUGGCAGAUUGCAUCGUAUGUUGUUUUAUGCGUAUGAUAUUUUGCCAGGCCAAAGUUAUGAGUUCUAUAAGGAAGCUGGCAAAA
(((.((.(...(((..(((((((....(((((((((........)))))))))..))))))).)))...........((((....))))))).)))... (-29.85 = -29.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:36 2006