Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,249,924 – 12,250,072 |
Length | 148 |
Max. P | 0.924260 |
Location | 12,249,924 – 12,250,032 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 87.68 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -22.40 |
Energy contribution | -22.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.73 |
Structure conservation index | 0.83 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12249924 108 - 22224390 ACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAAAGGCUUUUG-----CCACUCCCAUCGCCCUCC-C .((((..((((....))))((((.((.((((((((((((.(((.((..(.....)..)).))).))))))))))))(....)))...))-----))......))))......-. ( -28.20) >DroSec_CAF1 17947 113 - 1 ACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAAAGGCUUUUCCAGCCCCACCACCCUCCCUCUCC-C .................((((....(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).)...((((.....))))...........))))...-. ( -26.40) >DroEre_CAF1 13179 107 - 1 ACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUUGAAAGGCUUUUCCACCACCACCA-------CCACCCC .................(((((...((((((((((((((.(((.((..(.....)..)).))).))))))))))))))....))))).............-------....... ( -26.50) >consensus ACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAAAGGCUUUUCCA_C_CCACCACC_UC_CCCUCC_C .................(((((...(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).)....)))))........................... (-22.40 = -22.40 + 0.00)
Location | 12,249,952 – 12,250,072 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -25.26 |
Energy contribution | -25.07 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.54 |
Structure conservation index | 1.01 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12249952 120 + 22224390 UUCGAAAGUUGCCGUCUAAAUAUUAUUUUACACGAUGCUUUAACGGCAACUUUUGCAUGCCUCAUAAUAAUAAUAAUCGUCAUAAUGCCGCCAGGCAACAACUGUUUCAUUAAAAGAAAA ..(((((((((((((.((((((((.........)))).)))))))))))))))))..............................((((....)))).......((((.......)))). ( -25.00) >DroSec_CAF1 17980 120 + 1 UUCGAAAGUUGCCGUCUAAAUAUUAUUUUACACGAUGCUUUAACGGCAACUUUUGCAUGCCUCAUAAUAAUAAUAAUCGUCAUAAUGCCGCCAGGCAACAACUGUUUCAUUAAAAGAAAA ..(((((((((((((.((((((((.........)))).)))))))))))))))))..............................((((....)))).......((((.......)))). ( -25.00) >DroEre_CAF1 13206 120 + 1 UUCAAAAGUUGCCGUCUAAAUAUUAUUUUACACGAUGCUUUAACGGCAACUUUUGCAUGCCUCAUAAUAAUAAUAAUCGUCAUAAUGCCGCCAGGCAACAACUGUUUCAUUAAAAGAAAA ..(((((((((((((.((((((((.........)))).)))))))))))))))))..............................((((....)))).......((((.......)))). ( -25.30) >DroYak_CAF1 6396 120 + 1 UUCGAAAGUUGCCGUCUAAAUAUUAUUUUACACGAUGCUUUAACGGCAACUUUUGCAUGCCUCAUAAUAAUAAUAAUCGUCAUAAUGCCGCCAGGCAACAACUGUUUCAUUAAAAGAAAA ..(((((((((((((.((((((((.........)))).)))))))))))))))))..............................((((....)))).......((((.......)))). ( -25.00) >consensus UUCGAAAGUUGCCGUCUAAAUAUUAUUUUACACGAUGCUUUAACGGCAACUUUUGCAUGCCUCAUAAUAAUAAUAAUCGUCAUAAUGCCGCCAGGCAACAACUGUUUCAUUAAAAGAAAA ..(((((((((((((.((((((((.........)))).)))))))))))))))))..............................((((....)))).......((((.......)))). (-25.26 = -25.07 + -0.19)
Location | 12,249,952 – 12,250,072 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -28.80 |
Energy contribution | -28.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.97 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12249952 120 - 22224390 UUUUCUUUUAAUGAAACAGUUGUUGCCUGGCGGCAUUAUGACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAA ...((((.((((((((.((((((((((....)))).....)))))).)).)))))).))))....(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).).. ( -28.80) >DroSec_CAF1 17980 120 - 1 UUUUCUUUUAAUGAAACAGUUGUUGCCUGGCGGCAUUAUGACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAA ...((((.((((((((.((((((((((....)))).....)))))).)).)))))).))))....(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).).. ( -28.80) >DroEre_CAF1 13206 120 - 1 UUUUCUUUUAAUGAAACAGUUGUUGCCUGGCGGCAUUAUGACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUUGAA ...((((.((((((((.((((((((((....)))).....)))))).)).)))))).))))....((((((((((((((.(((.((..(.....)..)).))).)))))))))))))).. ( -32.90) >DroYak_CAF1 6396 120 - 1 UUUUCUUUUAAUGAAACAGUUGUUGCCUGGCGGCAUUAUGACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAA ...((((.((((((((.((((((((((....)))).....)))))).)).)))))).))))....(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).).. ( -28.80) >consensus UUUUCUUUUAAUGAAACAGUUGUUGCCUGGCGGCAUUAUGACGAUUAUUAUUAUUAUGAGGCAUGCAAAAGUUGCCGUUAAAGCAUCGUGUAAAAUAAUAUUUAGACGGCAACUUUCGAA ...((((.((((((((.((((((((((....)))).....)))))).)).)))))).))))....(.((((((((((((.(((.((..(.....)..)).))).)))))))))))).).. (-28.80 = -28.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:35 2006