Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,246,783 – 12,246,881 |
Length | 98 |
Max. P | 0.992289 |
Location | 12,246,783 – 12,246,881 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -18.44 |
Energy contribution | -19.30 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.14 |
Mean z-score | -2.68 |
Structure conservation index | 0.53 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12246783 98 - 22224390 CCAAGGACUUUGAUGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCAAGAGCUCUUUAUGUACUACUCUGUGC--GU------- ....((((......)))).(((..(.(.((((((((........)))))))).)).)))....((((.....))))....((((((......))))--))------- ( -29.40) >DroPse_CAF1 44208 84 - 1 CCGGG-----UGAUGUCCAGCCCGGAUGUCGUUUUCAAUAAA-GGCAUUGGGGCUGGGCGUUAAGCUGUA--------UAGUGUACACAUAUGUAC--GC------- .(((.-----(((((((((((((.((((((............-)))))).)))))))))))))..)))..--------..(((((((....)))))--))------- ( -40.80) >DroSec_CAF1 14947 98 - 1 CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCGAGAGCUCUUUAUGUACUACUCAGUGC--GU------- ..(((((.(((((((((...(((.(....)((((((........)))))))))...)))))))))..((....)))))))(((((((....)))))--))------- ( -31.90) >DroSim_CAF1 4705 98 - 1 CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCGAGAGCUCUUUAUGUACUACUCAGUGC--GU------- ..(((((.(((((((((...(((.(....)((((((........)))))))))...)))))))))..((....)))))))(((((((....)))))--))------- ( -31.90) >DroYak_CAF1 3143 103 - 1 CCAAGGACUUUGACGUCCUGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGAACAGGCGUUAAGCUGCG--AGCUCUUUAUGUGCUACUCUCUACGU--UUGUAUG ((.........(((((((.....)))))))((((((........)))))))).((((((((..((.....--(((.(.....).)))...))..))))--))))... ( -33.20) >DroPer_CAF1 41304 84 - 1 CCGGG-----UGAUGUCCAGCCCGGAUGUCGUUUUCAAUAAA-GGCAUUGGGGCUGGGCGUUAAGCUGUA--------CAGUGUACACAUAUGUAC--GC------- .(((.-----(((((((((((((.((((((............-)))))).)))))))))))))..)))..--------..(((((((....)))))--))------- ( -40.80) >consensus CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCA__AGCUCUUUAUGUACUACUCUGUAC__GU_______ ((.........(((((((.....)))))))((((((........))))))))....(((.....)))...............((((......))))........... (-18.44 = -19.30 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006