Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,237,801 – 12,237,895 |
Length | 94 |
Max. P | 0.985275 |
Location | 12,237,801 – 12,237,895 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.25 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -14.02 |
Energy contribution | -16.14 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.52 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12237801 94 + 22224390 UGUG------------AAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA--------------GUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC ..((------------(.(((((...(((((((((((((.(((((((....--------------.)))))))((....))............)))))))))))))))))).)))..... ( -27.70) >DroSim_CAF1 61439 105 + 1 UGUGAACGUGAAUGUGAAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA--------------GUACAUGUGAUGAUUCAUUUUGCAAUAUUG-AUAUUGUGCGUCGCACUUAAAUUC (((((.(((....((((((....((((((((..(((((((....)))))))--------------))))))))....))))))...((((((...-.))))))))))))))......... ( -28.80) >DroWil_CAF1 28652 83 + 1 UCUG------UAUGUGUGUGUGUGUGUGUAA---------------GUUGA--------------GUACAUGUGAU--UUCAUUUUGCAAUAUUGCAUAUUGUGUGUCGCACUUAAAUUC ....------...(((((.....((((((((---------------((((.--------------......(((..--..)))....)))).)))))))).......)))))........ ( -14.90) >DroYak_CAF1 45371 114 + 1 UG------UGAAUGUGAAUGUGGAUGUGUACAAUGUGCAUACAUGUGUACACUGUACAGUAUACUGUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC ..------.((((.(((.(((((...((((((((((((((((....)))((((((((((....))))))).)))...................)))))))))))))))))).))).)))) ( -36.00) >consensus UGUG______AAUGUGAAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA______________GUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC .........................((((((..(((((((....)))))))..............))))))((((((...((...((((....))))...))..)))))).......... (-14.02 = -16.14 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006