Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,224,476 – 12,224,579 |
Length | 103 |
Max. P | 0.980092 |
Location | 12,224,476 – 12,224,579 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 89.16 |
Mean single sequence MFE | -32.69 |
Consensus MFE | -28.98 |
Energy contribution | -30.42 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.90 |
Structure conservation index | 0.89 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12224476 103 + 22224390 GGGGUCGAAGGCAAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG .........(((.........(((((((...............((((.....)))----------)((.....))..)))).)))....((((((((....))))))))))). ( -32.00) >DroSec_CAF1 47298 103 + 1 GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG .........((((((((((..(((((((...............((((.....)))----------)((.....))..)))).)))...((......))....)))))))))). ( -32.50) >DroEre_CAF1 44671 103 + 1 GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGGCCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG .........((((((((((...(((.(((.............(((((.....)))----------)).....)))..)))((((.........)))).....)))))))))). ( -34.17) >DroYak_CAF1 31848 103 + 1 GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG .........((((((((((..(((((((...............((((.....)))----------)((.....))..)))).)))...((......))....)))))))))). ( -32.50) >DroAna_CAF1 61129 104 + 1 -GAGACCGAGGAGAAGAG-------GGCAACAAUAAACAUUCCCAGCGACUGGCUGGUUCUUUCUGGCCAAGUGCAAGCUGACCGAAAGGAAAGGCCAAAAGGUU-UUCGCCG -(((((((((.((((...-------(....)...........(((((.....))))))))))))(((((.(((....)))..((....))...)))))...))))-))..... ( -32.30) >consensus GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU__________GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG .........(((.........(((((((...(((....)))....(((..(((((((......)))))))..)))..)))).)))....((((((((....))))))))))). (-28.98 = -30.42 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:09 2006