Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,214,932 – 12,215,029 |
Length | 97 |
Max. P | 0.557444 |
Location | 12,214,932 – 12,215,029 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.33 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -18.89 |
Energy contribution | -20.20 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.10 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12214932 97 - 22224390 UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUG-----GAUGGCCAUU-----------------GGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA .......................(.((((((((..((((((((..((((..((-----(....)))..-----------------..))))...))))))))..)))))))).)..... ( -21.20) >DroSec_CAF1 41647 115 - 1 ----UUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGGAUUGGAUGGCCAUUGGUUCGAUCAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA ----.((((.(((((...((.((((.(((((((((...(((((((((((((..(..(((....))))..)))))).....)))))))...))))))))))))).)).)))))))))... ( -30.40) >DroSim_CAF1 43434 119 - 1 UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGGAUUGGAUGGCCAUUGGUUCGAUCAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA ..(((((...(((((...((.((((.(((((((((...(((((((((((((..(..(((....))))..)))))).....)))))))...))))))))))))).)).))))).))))). ( -31.20) >DroYak_CAF1 26343 114 - 1 UGAAUUUUACACUGAAUGCGAAGCCAUUAAUCAAUGCUUCGAUACUCGGACUGG----GAUGGCCAUUGGUUUGG-CAAAGUUUUGGCUGAUUGAUUGAGGUUUUGGUUAAUUGAAUUA .......................(.(((((((((.((((((((..((((.(..(----(((.((((......)))-)...))))..)))))...)))))))).))))))))).)..... ( -32.90) >consensus UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGG____GAUGGCCAUUGGUUCGA_CAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA .......................(.((((((((..((((((((....((.(((.......)))))......((((((((....))))))))...))))))))..)))))))).)..... (-18.89 = -20.20 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:06 2006