Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,384,811 – 1,384,905 |
Length | 94 |
Max. P | 0.991521 |
Location | 1,384,811 – 1,384,905 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -37.43 |
Consensus MFE | -37.43 |
Energy contribution | -37.43 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.11 |
Structure conservation index | 1.00 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1384811 94 + 22224390 UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAAAGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAGGCUCCGG ..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.30) >DroSec_CAF1 12221 94 + 1 UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG ..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.50) >DroSim_CAF1 11946 94 + 1 UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG ..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.50) >consensus UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG ..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). (-37.43 = -37.43 + -0.00)
Location | 1,384,811 – 1,384,905 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 98.58 |
Mean single sequence MFE | -36.17 |
Consensus MFE | -36.13 |
Energy contribution | -36.13 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 1.00 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1384811 94 - 22224390 CCGGAGCCUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACUUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA ..(((((.(((.(((........))).....((((((((.(....).)))))))))))...((((..((........))...)))))))))... ( -35.90) >DroSec_CAF1 12221 94 - 1 CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA ..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... ( -36.30) >DroSim_CAF1 11946 94 - 1 CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA ..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... ( -36.30) >consensus CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA ..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... (-36.13 = -36.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:17 2006