Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,209,692 – 12,209,798 |
Length | 106 |
Max. P | 0.913899 |
Location | 12,209,692 – 12,209,798 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -21.20 |
Energy contribution | -21.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.64 |
Structure conservation index | 0.54 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12209692 106 - 22224390 CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUAAGUGCCGGGGUAAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAACAAACGUAAGGUGGCUUCUAACGA--- .(((((((((((....)))).....(((((...(((((.((((....))))...((....)).)))))..)))------))(((........)))..)))))))........--- ( -41.40) >DroSec_CAF1 36571 106 - 1 CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAAGAAACAUAAGGUGGCUUCUAACGA--- .(((((((((((....)))).....(((((...(..((.((((....))))...((....)).))..)..)))------))................)))))))........--- ( -37.20) >DroSim_CAF1 37949 106 - 1 CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAAGAAACAUAAGGUGGCUUCUAACGA--- .(((((((((((....)))).....(((((...(..((.((((....))))...((....)).))..)..)))------))................)))))))........--- ( -37.20) >DroEre_CAF1 34216 106 - 1 CAGCCGUCGAUCGCAAGAUCAAGCAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGCGGUACAUGCA------GUACGAGGACAAGCGGAGUGUGGCCUCCAACGA--- ..((.(((((((....)))).....((((((((.((((....(((((.....)))))...)))).).)).)))------)).....)))..))((((......)))).....--- ( -39.90) >DroYak_CAF1 20879 106 - 1 CAGCCGUCGAUCGCAAGAUCAAACAGCUGCUGAGCGCCGGUGUGAUGGCCCACAUCGAGAGGCGGUAUAUGCA------GUACGAGGGCAAACAGCAAUUGGCUUCUAAUGA--- ..(((.((((((....)))).....(((((..(.((((....(((((.....)))))...)))).)....)))------))..)).)))....(((.....)))........--- ( -39.50) >DroPer_CAF1 1770 106 - 1 ACGCCUUCGACCGCAAGAUCAAACAGCUGCUCAGCUCCGGCGUAGUGUCGCAUAUCGAGCGCCGGUACUUGCGACUGUGCUACGCCGACA---------UGGCAGCCAAAGACAG ........((.(....).)).....(((((.((....((((((((((((((((((((.....)))))..))))))...)))))))))...---------)))))))......... ( -41.30) >consensus CAGCCAUCGAUCGCAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA______GUACGAGAACAAACAUAAGGUGGCUUCUAACGA___ ..((((..((((....)))).......(((...(..((.(((......)))...((....)).))..)..)))..........................))))............ (-21.20 = -21.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006