Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,209,346 – 12,209,466 |
Length | 120 |
Max. P | 0.624138 |
Location | 12,209,346 – 12,209,466 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -22.93 |
Energy contribution | -23.27 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12209346 120 + 22224390 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCGUUUCCUCCGAAGAUUAACAAAUUAGCAAGAGGGAUAUUUGGCCAUUAACGAACUGACUACUAGCUACAUUAGCGAACUAGCUUUAAAAA .(((((...(.(((.((((((((((..((((.......)))).....)))))))))).))).)....((((........))))....))))).((((...))))................ ( -24.50) >DroSec_CAF1 36179 120 + 1 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUCGUUGGCCAUUAACGAACUGGCUACUAGCUACAUUACAAAUCUAGCUUUAAAAA .(((((.....(((.((((((((((...(((((......)))))...)))))))))).))).((.((((((.....)))))).))..)))))(((((.((.....)).)))))....... ( -34.00) >DroSim_CAF1 37577 96 + 1 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUGGUUGGCCAUUAACGAACUG------------------------GCUCUAAAAA ((((.....(.(((.((((((((((...(((((......)))))...)))))))))).))).)(((((....))))).....))))------------------------.......... ( -29.40) >consensus CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUAGUUGGCCAUUAACGAACUG_CUACUAGCUACAUUA___A_CUAGCUUUAAAAA ((((.......(((.((((((((((...(((((......)))))...)))))))))).))).((........))........)))).................................. (-22.93 = -23.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006