Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,209,179 – 12,209,287 |
Length | 108 |
Max. P | 0.683664 |
Location | 12,209,179 – 12,209,287 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -24.99 |
Consensus MFE | -18.65 |
Energy contribution | -18.98 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.17 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12209179 108 + 22224390 AGAAGUAAGC-----CCCAACCCAUCCGGCAGCUGCAUUACAAGUCUUAAAUAAAUUUUUUAAGGCCAGCCGGC--CACCGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU ..........-----..........((((((((((((((....((((((((.......))))))))..((.(..--..).))...............)))))))).)).)))).. ( -26.30) >DroSec_CAF1 36013 107 + 1 AGAAGUAAGC-----CCCAACCCAUCCAGUAGCUGCAUUACAAGUCUUAAAUCAAUU-UUUAAGGCCAGCCGGC--CACCGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU ..........-----..........((((((((((((((....((((((((......-))))))))..((.(..--..).))...............)))))))).)).)))).. ( -25.50) >DroSim_CAF1 37411 107 + 1 AGAAGUAAGC-----CCCAACCCAUCCAGUAGCUGCAUUACAAGUCUUAAAUCAAUU-UUUAAGGCCAGCCGGC--CACCGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU ..........-----..........((((((((((((((....((((((((......-))))))))..((.(..--..).))...............)))))))).)).)))).. ( -25.50) >DroEre_CAF1 33676 112 + 1 AGCUGUAAGCUCAACCUCAACCCAUCCAGCGGCUGCGUUACAAGUCUUAAAUCAAUU-UUUAAGGCCAGCCGGC--CACCGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU (((.....)))..........(((..(((((((((.(((....((((((((......-)))))))).)))))))--)...((((..............)))).)).))..))).. ( -28.74) >DroYak_CAF1 20361 94 + 1 ------------------AAACCAUCCAGCGGCUGCAUUACAAGUCUUAAAUCAAUU-UUUAAGCCCAGCCGGC--CAACGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU ------------------.......((((((((((((((.......(((((......-)))))(((.....)))--.....................)))))))).)).)))).. ( -21.40) >DroPer_CAF1 1072 93 + 1 ---------------------GCCUGCUGUCCAUGCAUUACAAGUCUUAAAUCAAUU-UUUAAGGCCAUCUUGCGGCACCGCACAAAAAUCCAUCUAAGUGCACCAUGUCUGGCU ---------------------(((.((......((((((....((((((((......-)))))))).....((((....))))..............))))))....))..))). ( -22.50) >consensus AGAAGUAAGC_____CCCAACCCAUCCAGCAGCUGCAUUACAAGUCUUAAAUCAAUU_UUUAAGGCCAGCCGGC__CACCGCACAAAAAUCCAUCUAAGUGCAGCAUGUCUGGCU .........................((((((((((((((....((((((((.......))))))))......((......))...............)))))))).)).)))).. (-18.65 = -18.98 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:59 2006