Locus 4683

Sequence ID	X_DroMel_CAF1
Location	12,202,550 – 12,202,999
Length	449
Max. P	0.999831

overview

Window 1

Location	12,202,550 – 12,202,654
Length	104
Sequences	5
Columns	104
Reading direction	forward
Mean pairwise identity	95.58
Mean single sequence MFE	-24.38
Consensus MFE	-22.38
Energy contribution	-23.18
Covariance contribution	0.80
Combinations/Pair	1.00
Mean z-score	-1.28
Structure conservation index	0.92
SVM decision value	0.62
SVM RNA-class probability	0.802613
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202550 104 + 22224390
UUCCAAUUGCGUUGAUUUGUAAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCUCAUACACGAUUGCAAGACUG
...((((((.(((((.((((..(((((((((((((...........)))))(((((....)))))...))))))))..)))).))).)).))))))........ ( -25.60)
>DroSec_CAF1 28839 104 + 1
UUCCAAUUGCGUUGAUUUGUAAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCUCAUACACGAUUGCAAGACUG
...((((((.(((((.((((..(((((((((((((...........)))))(((((....)))))...))))))))..)))).))).)).))))))........ ( -25.60)
>DroSim_CAF1 30024 104 + 1
UUCCAAUUGCGUUGAUUUGUAAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCUCAUACACGAUUGCAAGACUG
...((((((.(((((.((((..(((((((((((((...........)))))(((((....)))))...))))))))..)))).))).)).))))))........ ( -25.60)
>DroEre_CAF1 27960 104 + 1
UUCCAAUUGCGUUGAUUUGUUAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCUCAUACACGCUUGCAAGACUG
........(((((((.((((..(((((((((((((...........)))))(((((....)))))...))))))))..)))).)))...))))........... ( -22.40)
>DroYak_CAF1 13767 98 + 1
UUCCAAUUGCGUUGAUUUGUUAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCGCAUACAAGACUG------UG
.......(((((((...(((..(((((((((((((...........)))))(((((....)))))...))))))))))))))))))..........------.. ( -22.70)
>consensus
UUCCAAUUGCGUUGAUUUGUAAUAUUUGCUGUCGUUUCAUUAAUAUGCGAUAAGCAUUAUUGUUUCUGGGCAAAUGGCACAGCUCAUACACGAUUGCAAGACUG
...((((((.(((((.((((..(((((((((((((...........)))))(((((....)))))...))))))))..)))).))).)).))))))........ (-22.38 = -23.18 +   0.80)

alignment

secondary structure

dotplot

Window 2

Location	12,202,654 – 12,202,766
Length	112
Sequences	5
Columns	112
Reading direction	forward
Mean pairwise identity	93.95
Mean single sequence MFE	-28.40
Consensus MFE	-24.12
Energy contribution	-24.12
Covariance contribution	-0.00
Combinations/Pair	1.08
Mean z-score	-2.03
Structure conservation index	0.85
SVM decision value	2.01
SVM RNA-class probability	0.985547
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202654 112 + 22224390
CAACACAUCGAUGAUUAUUGCGGCAUAAUUGUUGCAAAACUUGAACUCUUUGACCGUCCGGUCCAUCGGACAAUCGGCCAAGGAAUAAAGGACACUGUCCCCCAUUUCCAAC
.......(((((.....((((((((....))))))))..................((((((....)))))).)))))....((((....((((...)))).....))))... ( -28.90)
>DroSec_CAF1 28943 110 + 1
CAACACAUCGAUGAUUAUUGCGGUAUAAUUGUUGCAAAACUUGAACUCGUUGACCGUCCGGUCCAUCGGACAAUCGGCCAAGGAAUAAAGGACACUGUCC-CCAUUUCC-AC
........(((..(((((......)))))..)))..............(((((..((((((....))))))..)))))...((((....((((...))))-....))))-.. ( -26.20)
>DroSim_CAF1 30128 110 + 1
CAACACAUCGAUGAUUAUUGCGGCAUAAUUGUUGCAAAACUUGAACUCUUUGACCGUCCGGUCCAUCGGACAAUCGGCCAAGGAAUAAAGGACACUGUCC-CCAUUUCC-AC
.......(((((.....((((((((....))))))))..................((((((....)))))).)))))....((((....((((...))))-....))))-.. ( -29.50)
>DroEre_CAF1 28064 110 + 1
CAACACAUCGAUGAUUAUUGCGGCAUAAUUGUUGCAAAACCUGAACUCUUUGACCGUCCGGUCCAUCGGACAAUCAGCCAAGGAAUAAAGGCUGCUGUCC-CCAUUUCC-AC
.........((((....((((((((....))))))))..............((((....))))))))(((((..(((((..........))))).)))))-........-.. ( -32.50)
>DroYak_CAF1 13865 106 + 1
CAACACAUCGAUGAUUAUUGCGGCAUAAUUGUUGCAAAACUUGAACUCUUUGAC----CAGUCCAUCGGACAAUCAGCCAAGGAAUAAAGGAUCCUGUCC-UCAUUUCC-AC
...........(((((.((((((((....)))))))).................----..((((...))))))))).....((((...(((((...))))-)...))))-.. ( -24.90)
>consensus
CAACACAUCGAUGAUUAUUGCGGCAUAAUUGUUGCAAAACUUGAACUCUUUGACCGUCCGGUCCAUCGGACAAUCGGCCAAGGAAUAAAGGACACUGUCC_CCAUUUCC_AC
.......((((((....((((((((....))))))))..............((((....))))))))))............((((....((((...)))).....))))... (-24.12 = -24.12 +  -0.00)

alignment

secondary structure

dotplot

Window 3

Location	12,202,728 – 12,202,845
Length	117
Sequences	3
Columns	117
Reading direction	forward
Mean pairwise identity	95.97
Mean single sequence MFE	-24.13
Consensus MFE	-21.39
Energy contribution	-21.17
Covariance contribution	-0.22
Combinations/Pair	1.05
Mean z-score	-1.80
Structure conservation index	0.89
SVM decision value	0.00
SVM RNA-class probability	0.535421
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202728 117 + 22224390
CGGCCAAGGAAUAAAGGACACUGUCCCCCAUUUCCAACUCACAUCUACACAUCUGCGCAUCGCCGCACAGCCCGCUGGCCACCCUUCAUCCGGUCUUAGCCCCACUCCUGUGCCACA
.(((((.((((....((((...)))).....)))).................(((.((......)).))).....)))))...........(((..(((........))).)))... ( -25.50)
>DroSec_CAF1 29017 113 + 1
CGGCCAAGGAAUAAAGGACACUGUCC-CCAUUUCC-ACUCACAUCCACACAUCUGCGCAUCGCCGCACAACCCGCUGGCCACCCUUCAUCCGGUCUUAACCCCACUCCU--GCCACA
.(((((.((((....((((...))))-....))))-.................((((......))))........)))))...........(((....)))........--...... ( -22.80)
>DroSim_CAF1 30202 113 + 1
CGGCCAAGGAAUAAAGGACACUGUCC-CCAUUUCC-ACUCACAUCCACACAUCUGCGCAUCGCCGCACAGCCCGCUGGCCACCCUUCAUCCGGUCUUAACCCCACUCCU--GCCACA
.(((((.((((....((((...))))-....))))-................(((.((......)).))).....)))))...........(((....)))........--...... ( -24.10)
>consensus
CGGCCAAGGAAUAAAGGACACUGUCC_CCAUUUCC_ACUCACAUCCACACAUCUGCGCAUCGCCGCACAGCCCGCUGGCCACCCUUCAUCCGGUCUUAACCCCACUCCU__GCCACA
.(((((.((((....((((...)))).....))))..................((((......))))........)))))...........(((....)))................ (-21.39 = -21.17 +  -0.22)

alignment

secondary structure

dotplot

Window 4

Location	12,202,766 – 12,202,885
Length	119
Sequences	3
Columns	119
Reading direction	reverse
Mean pairwise identity	97.18
Mean single sequence MFE	-38.27
Consensus MFE	-38.56
Energy contribution	-37.90
Covariance contribution	-0.66
Combinations/Pair	1.09
Mean z-score	-1.32
Structure conservation index	1.01
SVM decision value	0.00
SVM RNA-class probability	0.535991
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202766 119 - 22224390
UUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCGUGUGGCACAGGAGUGGGGCUAAGACCGGAUGAAGGGUGGCCAGCGGGCUGUGCGGCGAUGCGCAGAUGUGUAGAUGUGA
....(((((((..(((..((((.(.(((........))).).))))...)))((..(((((...((.......)).))))).))...(((((((....))))))).)))))))...... ( -40.60)
>DroSec_CAF1 29053 117 - 1
UUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCGUGUGGC--AGGAGUGGGGUUAAGACCGGAUGAAGGGUGGCCAGCGGGUUGUGCGGCGAUGCGCAGAUGUGUGGAUGUGA
....(((((((..(((..((((.(.(((........))).).))))--.)))....(((((...((.......)).))))).(((.((((.....)))).)))...)))))))...... ( -36.30)
>DroSim_CAF1 30238 117 - 1
UUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCGUGUGGC--AGGAGUGGGGUUAAGACCGGAUGAAGGGUGGCCAGCGGGCUGUGCGGCGAUGCGCAGAUGUGUGGAUGUGA
....(((((((..(((..((((.(.(((........))).).))))--.)))((..(((((...((.......)).))))).))...(((((((....))))))).)))))))...... ( -37.90)
>consensus
UUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCGUGUGGC__AGGAGUGGGGUUAAGACCGGAUGAAGGGUGGCCAGCGGGCUGUGCGGCGAUGCGCAGAUGUGUGGAUGUGA
....(((((((..(((..((((.(.(((........))).).))))...)))((..(((((...((.......)).))))).))...(((((((....))))))).)))))))...... (-38.56 = -37.90 +  -0.66)

alignment

secondary structure

dotplot

Window 5

Location	12,202,845 – 12,202,965
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	96.22
Mean single sequence MFE	-34.70
Consensus MFE	-31.33
Energy contribution	-31.83
Covariance contribution	0.50
Combinations/Pair	1.00
Mean z-score	-1.64
Structure conservation index	0.90
SVM decision value	1.39
SVM RNA-class probability	0.949277
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202845 120 + 22224390
CGCCUCGUUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.(.(((((((((((.(....).)))))...........)))))).)(((..((((....))))..)))((((((((((.....(....))))))))))).((((......))))...... ( -35.00)
>DroSec_CAF1 29130 120 + 1
CGCCUCGUUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGAGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.(.(((((((((((.(....).)))))...........)))))).)(((..((((....))))..)))((((((((((...........)))))))))).((((......))))...... ( -33.60)
>DroSim_CAF1 30315 120 + 1
CGCCUCGUUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.(.(((((((((((.(....).)))))...........)))))).)(((..((((....))))..)))((((((((((.....(....))))))))))).((((......))))...... ( -35.00)
>DroEre_CAF1 28235 120 + 1
CGCCUCGCUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.((...((.(((((.(....).)))))...))...........((((....((((....))))..))))(((((((((.....(....))))))))))))((((......))))...... ( -35.40)
>DroYak_CAF1 14030 120 + 1
CGCCUCGUUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.(.(((((((((((.(....).)))))...........)))))).)(((..((((....))))..)))((((((((((.....(....))))))))))).((((......))))...... ( -35.00)
>DroAna_CAF1 42580 112 + 1
------UCUGACGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAA-AGCCAAGCGGCUACUGUCACAUGGCCAAUGG-GGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
------(((((.(.((...))))))))...((...........((((...-((((....))))..))))(((((((((....-(....))))))))))))((((......))))...... ( -34.20)
>consensus
CGCCUCGUUUUCGACCCCUGGCUCGGAUUUGCAUAAUAAAUGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUA
.........(((((.(....).)))))...((...........((((....((((....))))..))))(((((((((.....(....))))))))))))((((......))))...... (-31.33 = -31.83 +   0.50)

alignment

secondary structure

dotplot

Window 6

Location	12,202,845 – 12,202,965
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	96.22
Mean single sequence MFE	-40.98
Consensus MFE	-38.12
Energy contribution	-38.12
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.79
Structure conservation index	0.93
SVM decision value	4.13
SVM RNA-class probability	0.999809
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202845 120 - 22224390
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCG
.....(((((......)))))((((((((((((.......))))))))))))......(((.((((((((((((((..........))))))....))))))))..(((....)))))). ( -41.30)
>DroSec_CAF1 29130 120 - 1
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCUCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCG
.....(((((......)))))((((((((((((.......))))))))))))......(((.((((((((((((((..........))))))....))))))))..(((....)))))). ( -41.30)
>DroSim_CAF1 30315 120 - 1
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCG
.....(((((......)))))((((((((((((.......))))))))))))......(((.((((((((((((((..........))))))....))))))))..(((....)))))). ( -41.30)
>DroEre_CAF1 28235 120 - 1
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAGCGAGGCG
.....(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))(((((..............(((......)))(.(....))))))). ( -41.50)
>DroYak_CAF1 14030 120 - 1
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCG
.....(((((......)))))((((((((((((.......))))))))))))......(((.((((((((((((((..........))))))....))))))))..(((....)))))). ( -41.30)
>DroAna_CAF1 42580 112 - 1
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCC-CCAUUGGCCAUGUGACAGUAGCCGCUUGGCU-UUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGUCAGA------
................((((.((((((((((((....-..))))))))))))......(((.(((((((-(.(.....(((.....))).....).)))))))))))))))...------ ( -39.20)
>consensus
UAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCAUUUAUUAUGCAAAUCCGAGCCAGGGGUCGAAAACGAGGCG
.........(((.((((((((((((((((((((.......))))))))))))((((.((((....)))).))))...)))))))).)))......(((.(....).)))........... (-38.12 = -38.12 +   0.00)

alignment

secondary structure

dotplot

Window 7

Location	12,202,885 – 12,202,999
Length	114
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	87.27
Mean single sequence MFE	-31.78
Consensus MFE	-27.72
Energy contribution	-28.12
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-2.80
Structure conservation index	0.87
SVM decision value	3.30
SVM RNA-class probability	0.998952
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202885 114 + 22224390
UGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCAAAUGCACACAC-UG-CACACACUGCAC----A
...((((....((((....))))..))))(((((((((.....(....))))))))))..((((......))))..........((((..((((.....-))-)).....)))).----. ( -32.90)
>DroSec_CAF1 29170 105 + 1
UGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGAGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCAAAUGCACACAC-UG----------CAC----A
...((((....((((....))))..))))(((((((((...........)))))))))((((((......)))).......((.(((....)))))...-.)----------)..----. ( -30.30)
>DroSim_CAF1 30355 105 + 1
UGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCAAAUGCACACAC-UG----------CAC----A
...((((....((((....))))..))))(((((((((.....(....))))))))))((((((......)))).......((.(((....)))))...-.)----------)..----. ( -31.70)
>DroEre_CAF1 28275 99 + 1
UGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCAAAUGCACACAC---------------------
...((((....((((....))))..))))(((((((((.....(....))))))))))..((((......)))).......((.(((....)))))...--------------------- ( -30.40)
>DroAna_CAF1 42614 116 + 1
UGAGACACAA-AGCCAAGCGGCUACUGUCACAUGGCCAAUGG-GGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCCAAAGGACAUCCACAUCG-ACA-AGGACAUGGG
...((((...-((((....))))..))))(((((((((....-(....)))))))))).((((((....(((((........((((((...)).))))..)))))-...-.)))..))). ( -33.60)
>consensus
UGAGACACAAAAGCCAAGCGGCUACUGUCACAUGGCCAAUGGGGGAAACUGGCCAUGUGCCAUCUAUAAUGAUGAUAAUAAUGAUGCAAAUGCACACAC_UG__________CAC____A
...((((....((((....))))..))))(((((((((.....(....))))))))))..((((......)))).......((.(((....)))))........................ (-27.72 = -28.12 +   0.40)

alignment

secondary structure

dotplot

Window 8

Location	12,202,885 – 12,202,999
Length	114
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	87.27
Mean single sequence MFE	-38.06
Consensus MFE	-33.04
Energy contribution	-33.08
Covariance contribution	0.04
Combinations/Pair	1.03
Mean z-score	-3.78
Structure conservation index	0.87
SVM decision value	4.19
SVM RNA-class probability	0.999831
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12202885 114 - 22224390
U----GUGCAGUGUGUG-CA-GUGUGUGCAUUUGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCA
.----((((((.(((..-(.-....)..)))))))))........(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))...... ( -41.50)
>DroSec_CAF1 29170 105 - 1
U----GUG----------CA-GUGUGUGCAUUUGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCUCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCA
.----(((----------((-(((....)).))))))........(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))...... ( -36.50)
>DroSim_CAF1 30355 105 - 1
U----GUG----------CA-GUGUGUGCAUUUGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCA
.----(((----------((-(((....)).))))))........(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))...... ( -36.50)
>DroEre_CAF1 28275 99 - 1
---------------------GUGUGUGCAUUUGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCA
---------------------(((.((((....))))))).....(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))...... ( -34.70)
>DroAna_CAF1 42614 116 - 1
CCCAUGUCCU-UGU-CGAUGUGGAUGUCCUUUGGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCC-CCAUUGGCCAUGUGACAGUAGCCGCUUGGCU-UUGUGUCUCA
..((((((..-...-.))))))((((((....)))))).......(((((......)))))((((((((((((....-..))))))))))))((((.((((....))))-))))...... ( -41.10)
>consensus
U____GUG__________CA_GUGUGUGCAUUUGCAUCAUUAUUAUCAUCAUUAUAGAUGGCACAUGGCCAGUUUCCCCCAUUGGCCAUGUGACAGUAGCCGCUUGGCUUUUGUGUCUCA
.......................((((((....))).))).....(((((......)))))((((((((((((.......))))))))))))((((.((((....)))).))))...... (-33.04 = -33.08 +   0.04)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:58 2006