Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,199,643 – 12,199,744 |
Length | 101 |
Max. P | 0.994334 |
Location | 12,199,643 – 12,199,744 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -26.26 |
Energy contribution | -25.86 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 1.01 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994334 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12199643 101 - 22224390 UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA .......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -27.40) >DroSec_CAF1 25970 101 - 1 UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGUGUUGUAGCA .......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -25.50) >DroSim_CAF1 27151 101 - 1 UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA .......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -27.40) >DroEre_CAF1 25239 101 - 1 UCUAUCGGCAGCAGCGUUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGCGGAGCGUUGUAGCA .......((.(((((((((......).....(((.(((....((((((((..(((.......)))..))))))))...)))...)))..)))))))).)). ( -25.10) >DroYak_CAF1 10727 101 - 1 UCUAUCGGCAGCAGCGUUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA .......((.((((((((.......((....((..(((....((((((((..(((.......)))..))))))))...)))..)).)).)))))))).)). ( -25.00) >consensus UCUAUCGGCAGCAGCGCUGAAACAACUAAAAGCAACAAUUUUUGUUAAAAUUUGCUAAAUUUGCAUUUUUUGACGUUUUUGCGGUGAGGAGCGUUGUAGCA .......((.((((((((...((...(((((((((......))(((((((..(((.......)))..))))))))))))))..))....)))))))).)). (-26.26 = -25.86 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006