Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,199,317 – 12,199,425 |
Length | 108 |
Max. P | 0.718885 |
Location | 12,199,317 – 12,199,425 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 88.29 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -25.40 |
Energy contribution | -27.90 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.72 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12199317 108 + 22224390 CCCAAAACUGUUGGCUCUGCGGCUUUUGCCGGCGGUUGACUGACGCGUAUGCGUUAUUAAAUCUGCAUGUGUGU------GCGUACUCGCAUCCUACACAUGUAUACGUUUGUA ....((((.((..(((...((((....))))..)))..))((((((....)))))).......(((((((((((------(((....)))))...)))))))))...))))... ( -36.90) >DroSec_CAF1 25658 108 + 1 CCCAAAACUGAUGGCUCUGCGGCUUUUGCCGGCGGUUGACUGACGCGUAUGCGUUAUUAAAUCUGCAUGUGUGU------GCGUACUCGCAUCCUACACAUGUAUACGUUUGUA ......((.((((...(((((((....))).))))((((.((((((....))))))))))...(((((((((((------(((....)))))...)))))))))..)))).)). ( -35.10) >DroSim_CAF1 26839 108 + 1 CCCAAAACUGUUGGCUCUGCGGCUUUUGCCGGCGGUUGACUGACGCGUAUGCGUUAUUAAAUCUGCAUGUGUGU------GCGUACUCGCAUCCUACACAUGUAUACGUUUGUA ....((((.((..(((...((((....))))..)))..))((((((....)))))).......(((((((((((------(((....)))))...)))))))))...))))... ( -36.90) >DroYak_CAF1 10397 97 + 1 CCCAAAACUGUUGGCUCUGCGGCUUUUGCCGGCGGUUGACUGACGCGUAUGCGUUAUUAAAUCUGCAUGUGUGUGCGUGUGCGUACUCGCAUCCU-----------------CG .((((.....)))).....((((....))))((((((((.((((((....))))))))))..))))(((((.(((((....))))).)))))...-----------------.. ( -32.30) >consensus CCCAAAACUGUUGGCUCUGCGGCUUUUGCCGGCGGUUGACUGACGCGUAUGCGUUAUUAAAUCUGCAUGUGUGU______GCGUACUCGCAUCCUACACAUGUAUACGUUUGUA .....((((((((((............))))))))))...((((((....)))))).......((((((((((.......(((....)))....)))))))))).......... (-25.40 = -27.90 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:49 2006