Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,198,230 – 12,198,346 |
Length | 116 |
Max. P | 0.854925 |
Location | 12,198,230 – 12,198,346 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -27.78 |
Energy contribution | -27.70 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -2.00 |
Structure conservation index | 0.85 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12198230 116 - 22224390 UUUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC ...........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90) >DroSec_CAF1 24572 115 - 1 -UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC -..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90) >DroSim_CAF1 25794 115 - 1 -UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC -..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90) >DroEre_CAF1 24015 115 - 1 -UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC -..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90) >DroYak_CAF1 9435 115 - 1 -UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC -..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90) >DroAna_CAF1 36443 116 - 1 -UACCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCUGUUGUUGGUGUUGC---UGGCAUUUUUUUGCUAUUAGUUGGUUGCCAGCAGAUGGCCAUUAACGUCCAUUUAGCCGGGGCGCCAC -..((((...((((((((((...))))))))))..((((.((((.((((---(((((.......((((.....)))))))))))))...)))).))))............))))...... ( -41.81) >consensus _UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA___UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA_GGCGCCAC ...........(((((((((...)))))))))(((((((....)))).................((((...((((((.(((((...))))).)))))).......))))...)))..... (-27.78 = -27.70 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:48 2006