Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,195,610 – 12,195,710 |
Length | 100 |
Max. P | 0.932297 |
Location | 12,195,610 – 12,195,710 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -31.23 |
Consensus MFE | -29.09 |
Energy contribution | -29.15 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.80 |
Structure conservation index | 0.93 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12195610 100 + 22224390 UGGGGGUCCUGUGCCAGUGCGUUGGUGUG----UGUGCGUCUAAUAGAAAAUGCAAACGUGCGAAAUCGCAUUAAAUGAGCAUUAGCGCAUUGUUGGUUUAGUG ........(((.(((((((((((((((((----(.(((((..........))))).))(((((....))))).......))))))))))))...)))).))).. ( -31.70) >DroSec_CAF1 21935 104 + 1 GGGAUGUCCUGUGCCAGUGCGUUGGUGUGUGUGUGUGCGUCUAAUAGAAAAUGCAAACGUGCGAAAUCGCAUUAAAUGAGCAUUAGCGCAUUGUUGGUUUAGUG ........(((.((((((((((((((((((.(((((...((.....))..))))).))(((((....))))).......))))))))))))...)))).))).. ( -32.40) >DroSim_CAF1 23155 104 + 1 GGGGGGUCCUGUGCCAGUGAGUUGGUGUGUGUGUGUGCGUCUAAUAGAAAAUGCAAACGUGCGAAAUCGCAUUAAAUGAGCAUUAGCGCAUUGUUGGUUUAGUG ........(((.(((((..(((((((((((.(((((...((.....))..))))).))(((((....))))).......))))))))...)..))))).))).. ( -26.70) >DroEre_CAF1 21258 100 + 1 GUGAGGUCCUGUGCCAGUGCGCUGGUGUG----UGUGCGUCUAAUAGAAAAUGCAAACGUGCGAAAUCGCAUUAAAUGAGCAUUAGCGCAUUGUUGGUUUAGUG ........(((.(((((((((((((((((----(.(((((..........))))).))(((((....))))).......))))))))))))...)))).))).. ( -34.10) >consensus GGGAGGUCCUGUGCCAGUGCGUUGGUGUG____UGUGCGUCUAAUAGAAAAUGCAAACGUGCGAAAUCGCAUUAAAUGAGCAUUAGCGCAUUGUUGGUUUAGUG ........(((.((((((((((((((((.......(((((..........)))))...(((((....))))).......))))))))))))...)))).))).. (-29.09 = -29.15 + 0.06)
Location | 12,195,610 – 12,195,710 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -19.65 |
Consensus MFE | -17.58 |
Energy contribution | -17.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.89 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12195610 100 - 22224390 CACUAAACCAACAAUGCGCUAAUGCUCAUUUAAUGCGAUUUCGCACGUUUGCAUUUUCUAUUAGACGCACA----CACACCAACGCACUGGCACAGGACCCCCA ..............((.((((.(((........((((....)))).((.(((.(((......))).))).)----)........))).)))).))((....)). ( -20.30) >DroSec_CAF1 21935 104 - 1 CACUAAACCAACAAUGCGCUAAUGCUCAUUUAAUGCGAUUUCGCACGUUUGCAUUUUCUAUUAGACGCACACACACACACCAACGCACUGGCACAGGACAUCCC ..............((.((((.(((........((((....)))).((.(((.(((......))).))).))............))).)))).))((....)). ( -20.00) >DroSim_CAF1 23155 104 - 1 CACUAAACCAACAAUGCGCUAAUGCUCAUUUAAUGCGAUUUCGCACGUUUGCAUUUUCUAUUAGACGCACACACACACACCAACUCACUGGCACAGGACCCCCC .......((.....((((((((((.......(((((((..........)))))))...)))))).))))..........(((......)))....))....... ( -17.40) >DroEre_CAF1 21258 100 - 1 CACUAAACCAACAAUGCGCUAAUGCUCAUUUAAUGCGAUUUCGCACGUUUGCAUUUUCUAUUAGACGCACA----CACACCAGCGCACUGGCACAGGACCUCAC .......((..((.((((((..((.........((((....)))).((.(((.(((......))).))).)----).))..)))))).)).....))....... ( -20.90) >consensus CACUAAACCAACAAUGCGCUAAUGCUCAUUUAAUGCGAUUUCGCACGUUUGCAUUUUCUAUUAGACGCACA____CACACCAACGCACUGGCACAGGACCCCCC .......((.....((((((((((.......(((((((..........)))))))...)))))).))))..........(((......)))....))....... (-17.58 = -17.57 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:47 2006