Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,193,689 – 12,193,806 |
Length | 117 |
Max. P | 0.939256 |
Location | 12,193,689 – 12,193,806 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -38.82 |
Consensus MFE | -19.92 |
Energy contribution | -21.48 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.18 |
Mean z-score | -2.47 |
Structure conservation index | 0.51 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12193689 117 + 22224390 UUUUCCAGCUUGAGGUUAAGUUGACGACGGCAGGC--AAAGGCAAAGGCAAUGGCAAUGGCAAAGGCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU .....(((((((....)))))))..((((((((((--.((((((...((...((((..(((...((((.....)))).))))))).))...)))))).)))...)))))))........ ( -40.70) >DroSec_CAF1 20062 117 + 1 UUUUCCAGCUUGAGGUUAAGUUGACGACGGCGGCG--GCAGGCAAAGGCAAUGGUAAUGGCAAAGGCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU .....(((((((....)))))))..(((((((..(--((((((...((((.((((....((....)).)))).)))).)))))))(((..........)))...)))))))........ ( -43.00) >DroSim_CAF1 21262 111 + 1 UUUUCCAGCUUGAGGUUAAGUUGACGACGGCGGCG--GCAGGCAAAGGCAA------UGGCAAAGGCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU .....(((((((....)))))))..(((((((..(--((((((...((((.------((((.......)))).)))).)))))))(((..........)))...)))))))........ ( -43.20) >DroEre_CAF1 19514 89 + 1 UUCUCCAGCUU-----------------------------GGCCAAGGCAGAGGCAAUGG-AAAGGCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU .....((((((-----------------------------((((((((((...((..(((-(..((((.....))))..))))...))...))))))))))))..)))).......... ( -35.70) >DroYak_CAF1 4586 113 + 1 UUUUCCAGCUGGAGGUUAAGUCGACGACAAAGACGAGGACGACGAAGGCGAAGGCGAUG------GCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU ..((((....))))(((..(((.........)))...)))(((...(((..(((((..(------(((.....))))))))))))(((((.((.......)).))))))))........ ( -31.50) >consensus UUUUCCAGCUUGAGGUUAAGUUGACGACGGCGGCG__GAAGGCAAAGGCAAAGGCAAUGGCAAAGGCAGCUAAUGCCCGUCUGCCGGCAUAUGUUUUGGCCAAAUGCUGUCAUAAAUUU .....((((..........((((.......))))......(((.((((((...((..(((((..((((.....))))....)))))))...)))))).)))....)))).......... (-19.92 = -21.48 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:39 2006