Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,193,577 – 12,193,684 |
Length | 107 |
Max. P | 0.638339 |
Location | 12,193,577 – 12,193,684 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 94.21 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -18.48 |
Energy contribution | -18.04 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12193577 107 + 22224390 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCAAAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAAACUCGUCCUUCUUC ...(((..........))).....((((((((((......))))))))))....((((((((((.......(.((((......)))).)....)))))))))).... ( -23.90) >DroSec_CAF1 19950 107 + 1 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAAUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC .................(((((((((((((((((......))))))))))......(((((((......))))).))..)))))))((((.......))))...... ( -22.30) >DroSim_CAF1 21150 107 + 1 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAACCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC .................(((((((.(((((((((......))))))))).......(((((((......))))).))..)))))))((((.......))))...... ( -21.70) >DroEre_CAF1 19402 107 + 1 UAUGCAAAUUCCAUGCGGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGCACGAGUGACAUUUUGUGCCCAAAGUGGUCGCCCAUCCUCGUCCUUCCUC ..............((((((((((((((((((((......))))))))))......(((((((......)))))))...)))))))))).................. ( -26.70) >DroYak_CAF1 4474 107 + 1 UAUGCAAAUUCCAUGCUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGUCGACCAUCCUCGUCCUUCUUC ...(((.......)))........((((((((((......)))))))))).....((((((((((((((((((....)))))).))))......))))))))..... ( -22.80) >consensus UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC ...............(((((((((.(((((((((......))))))))).......(.(((((......))))).)...)))))))))................... (-18.48 = -18.04 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:38 2006