Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,192,892 – 12,193,103 |
Length | 211 |
Max. P | 0.995131 |
Location | 12,192,892 – 12,193,008 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.15 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -21.42 |
Energy contribution | -22.90 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.16 |
Mean z-score | -2.47 |
Structure conservation index | 0.62 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12192892 116 + 22224390 GGCAUUAAGUGUUUGCUGCCGCUGCCGGGUUCUCUUUUAAUUUCUGGCAGCAUUAUUCGGAUUUGGACAUCGAUUCAGAUGGAGAUU---GGCAUUUGCUAUCACUUUGGCUGCAUUUG (((...(((((...(((((((((((((((.............)))))))))........(((((...((((......)))).)))))---))))...))...)))))..)))....... ( -37.42) >DroSec_CAF1 19312 113 + 1 GGCAUUAAGUGUUUGCUGCCGCUGCCGGGU---CUUUUAAUUUCUGGUAGCAUUAUUCGGAUUUGGACAUGGAUUCGGAUGGAGAUU---GGCUUUUGCUUUCACUUUAGCUGCAUUUG .(((..(((((...((.((((((((((((.---.........))))))))).((((((((((((......)))))))))))).....---)))....))...)))))....)))..... ( -38.80) >DroSim_CAF1 20519 113 + 1 GGCAUUAAGUGUUUGCUGCCGCUGCCGGGU---CUUUUAAUUUCUGGCAGCAUUAUUCGGAUUUGGACAUGGAUUCGGAUGGAGAUU---GGCUUUUGCUUUCACUUUAGCUGCAUUUG .(((..(((((...((.((((((((((((.---.........))))))))).((((((((((((......)))))))))))).....---)))....))...)))))....)))..... ( -40.80) >DroEre_CAF1 18794 110 + 1 GGCAUUAAGUGUUUGCUGCCCCUGUCGGCU---CUUUUAAUUUCUGGCAGCGUUAUUCGGAUUUG------GAUUCAGUUGGAGAUUUUCGGCAGCGGCUUUCACUUUUGCUGCAUUUG ((((..(((((...(((((...((((((..---.....((((((..((..((.....))((....------...)).))..)))))).)))))))))))...))))).))))....... ( -31.10) >DroYak_CAF1 3824 102 + 1 GGCAUCAAGUGUUUGUUG-----GUUGGGU---CUUUUAAUUUCUGCCAGCAUUAUUCGCACUUG------GAUUUAGAUGGAGAUU---GGCUUUUAGCUUCACUUUAGCUGCAUUUG (((.((((((((.(((((-----((.(((.---........))).)))))))......)))))))------).......(((((...---(((.....)))...))))))))....... ( -25.40) >consensus GGCAUUAAGUGUUUGCUGCCGCUGCCGGGU___CUUUUAAUUUCUGGCAGCAUUAUUCGGAUUUGGACAU_GAUUCAGAUGGAGAUU___GGCUUUUGCUUUCACUUUAGCUGCAUUUG (((...(((((...((.((((((((((((.............))))))))).(((((.(((((........))))).)))))........)))....))...)))))..)))....... (-21.42 = -22.90 + 1.48)
Location | 12,193,008 – 12,193,103 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 75.24 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -8.57 |
Energy contribution | -10.21 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.23 |
Mean z-score | -2.58 |
Structure conservation index | 0.30 |
SVM decision value | 2.54 |
SVM RNA-class probability | 0.995131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12193008 95 + 22224390 ACAAGUGACUUUGUUAUGGUUAUGUGCUGCCUGAAGUCGAGGGGAGAAAUCG---UCGUUGGUUGGCGGGGUGCAUAAUUUAGCGUUUGUUUGUCUGU (((((..(...(((((.(((((((..(..((((.(..(((((.((....)).---)).)))..)..)))))..)))))))))))).)..))))).... ( -27.60) >DroSec_CAF1 19425 93 + 1 ACAAGUGACUUUGUUAUGGUUAUGUGUUGCCCGAUGUCG--GGGAGAAAUCG---UCGAUGGAGGGCGGGGUGCAUAAUUUAGCGUUUAUUUGUCUGU ((((((((...(((((.(((((((..((((((..(((((--(.((....)).---))))))..)))))..)..)))))))))))).)))))))).... ( -35.20) >DroSim_CAF1 20632 93 + 1 ACAAGUGACUUUGUUAUGGUUAUGUGUUGCCCGAAGUCG--GGGAGAAAUCG---UCGAUGGAUGGCGGGGUGCAUAAUUUAGCGUUUAUUUGUCUGU ((((((((...(((((.(((((((..((.((((..((((--(.((....)).---)))))...))).).))..)))))))))))).)))))))).... ( -30.80) >DroEre_CAF1 18904 89 + 1 ACAAGUGACUUUGUUAUGGUUAUGUGAUGUCUGAAGUCU--GGCAAAAAUCGAAGUCGAU----G---GGGUGCAUAACUUAGCGUUUGCUUGUCUGU (((((..(...(((((.((((((((..((((........--))))...((((....))))----.---....))))))))))))).)..))))).... ( -24.00) >DroAna_CAF1 31109 87 + 1 ACAAGUGACUUACUUUGCGGCCUUUGCCACCAGAAGCGG--CACAAAAGUCG------CG-GUCUGGGGCCUGAAUAAUUUACCAUUUGUUUGUCU-- (((((((..........(((.....(((.(((((.((((--(......))))------).-.)))))))))))..........)))))))......-- ( -27.05) >consensus ACAAGUGACUUUGUUAUGGUUAUGUGCUGCCCGAAGUCG__GGGAGAAAUCG___UCGAUGGAUGGCGGGGUGCAUAAUUUAGCGUUUGUUUGUCUGU ((((((((...(((((.((((((((.(((((.................................)))))...))))))))))))).)))))))).... ( -8.57 = -10.21 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:38 2006