Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,190,233 – 12,190,325 |
Length | 92 |
Max. P | 0.749737 |
Location | 12,190,233 – 12,190,325 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 82.59 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -20.25 |
Energy contribution | -19.75 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.81 |
Structure conservation index | 0.70 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12190233 92 + 22224390 CCCCCCAUUCAUAUAUAUGCCUCUGCGGCGCUCCUUUUUCAG-------CUAUCUGAGUUGAGCAGAGCAGA-----GCAGAUCCCGAGAUCCAAAUCCGGGAU .................(((.(((((...((((....(((((-------....)))))..))))...)))))-----))).((((((.(((....))))))))) ( -30.50) >DroSec_CAF1 16571 98 + 1 -CUCCCAUUCAUAUAUAUGCCUCUGCGGCGUUCCUUUUUCAGUCCACCGCUAUCUGAGUUGAGCAGAGCAGA-----GCAGAUCCCGAGAUCCAAAUCCGGGAU -................(((.(((((...((((....(((((...........)))))..))))...)))))-----))).((((((.(((....))))))))) ( -28.10) >DroEre_CAF1 16446 93 + 1 UC-GCCACUCACAUAUAUGCCUCUGCGACGCUCCUUCUUCAGUCCACGGCUAUCUGAGUUCAGCAGAGCAG----------AUCCCGAGAUCCAAAUCCGGGAU ..-..............(((.(((((...((((.......(((.....)))....))))...)))))))).----------((((((.(((....))))))))) ( -25.70) >DroYak_CAF1 892 104 + 1 ACACCCAUUCAUAUAUAUGCCUCUGCGGCGCUCCUUUUUCAAUCCACCGCUAUCUGAGUGGAGCAGAGCGGAGGAGAGCGGGUCCUGAUAUCCAAAUCCGGGAU ...(((............(((.....)))((((.........(((.(((((.(((....)))....))))).))))))))))(((((...........))))). ( -31.90) >consensus _C_CCCAUUCAUAUAUAUGCCUCUGCGGCGCUCCUUUUUCAGUCCACCGCUAUCUGAGUUGAGCAGAGCAGA_____GCAGAUCCCGAGAUCCAAAUCCGGGAU .................(((.(((((...((((......................))))...))))))))...........((((((.(((....))))))))) (-20.25 = -19.75 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:34 2006