Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,374,334 – 1,374,442 |
Length | 108 |
Max. P | 0.972980 |
Location | 1,374,334 – 1,374,442 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -36.60 |
Consensus MFE | -34.09 |
Energy contribution | -34.10 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -2.80 |
Structure conservation index | 0.93 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1374334 108 + 22224390 UUCCUGCUGGUAUCCUGCUGGCCGCCACGAGAAAACUGGUGGCUCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUUAAGGAACCAG--CUAAUUAG .....((((((.((((.((((((((((.(......)))))))).)))..(((........))).......(((((..........))))).)))))))))--)....... ( -35.80) >DroSec_CAF1 6370 110 + 1 UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGAAAACUGGUUGCCCAGAAUCCUAACUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG .....((((((.((((...(((.((((.(......))))).)))..((((((........)))....)))(((((..........))))).))))))))))......... ( -32.50) >DroSim_CAF1 7101 110 + 1 UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGGAAACUGGUGGCCCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG .....((((((.((((.((((..(((((.((....)).)))))))))..(((........))).......(((((..........))))).))))))))))......... ( -41.50) >consensus UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGAAAACUGGUGGCCCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG .....((((((.((((.((((..(((((.((....)).)))))))))..(((........))).......(((((..........))))).))))))))))......... (-34.09 = -34.10 + 0.01)
Location | 1,374,334 – 1,374,442 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 94.55 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -29.19 |
Energy contribution | -29.97 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -1.99 |
Structure conservation index | 0.85 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1374334 108 - 22224390 CUAAUUAG--CUGGUUCCUUAAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGAGCCACCAGUUUUCUCGUGGCGGCCAGCAGGAUACCAGCAGGAA .......(--(((((((((..((((..........))))..)....((((........)))).(((.(((.((((......).))).))))))..))).))))))..... ( -30.40) >DroSec_CAF1 6370 110 - 1 CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGAGUUAGGAUUCUGGGCAACCAGUUUUCUCGUGGCGGCCAACAGGAUACCAGCAGGAA .........((((((((((((((((..........)))))))..(((.(((.(((....((..((((....))))..))))).))))))......))).))))))..... ( -36.10) >DroSim_CAF1 7101 110 - 1 CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGGGCCACCAGUUUCCUCGUGGCGGCCAACAGGAUACCAGCAGGAA .........((((((((((((((((..........)))))))..(((.((...((..((((..((((....))))..)))).))...)).)))..))).))))))..... ( -36.30) >consensus CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGGGCCACCAGUUUUCUCGUGGCGGCCAACAGGAUACCAGCAGGAA .........((((((((((((((((..........)))))))..(((.(((......((((..((((....))))..))))..))))))......))).))))))..... (-29.19 = -29.97 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:14 2006