Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,189,414 – 12,189,525 |
Length | 111 |
Max. P | 0.964999 |
Location | 12,189,414 – 12,189,525 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 75.07 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -25.58 |
Energy contribution | -24.70 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12189414 111 - 22224390 GAGUUCCACUUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCA-ACUCCUAUGGCUUCGG-GUCUCUAGUUGAAGUCCUGGGAGUGGUGUGAC ..((..((((..((((((((.((((((.(((((.....)))))))))).))))).))))....-(((((((.((((((((-.(....).)))))))).)))))))))))..)) ( -42.80) >DroSec_CAF1 15748 113 - 1 GAGUUCCACUUCAAAGUGCUGGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCAAACUCCUAUGGCUUCGGGGGCUCUAGCUGAAGUCCUGGUAGCAGUGUGAC ..((..((((..(((((((((.(((((.(((((.....)))))))))).))))).))))..............(((.(.(((((((.....).)))))).).)))))))..)) ( -43.90) >DroEre_CAF1 15677 93 - 1 AGAUUCCA-UUCGUAGUGCUUAGGGUUUGUCAUUAGAGGCGACAACCCGCAGCAGCUGCAGCA-ACUCCUUCGGCUGCGG-GAC-AUAGUUGAGGUC---------------- .(((..((-.......((((..(((((((((......)))))..))))..)))).(((((((.-.........)))))))-...-.....))..)))---------------- ( -27.60) >consensus GAGUUCCACUUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCA_ACUCCUAUGGCUUCGG_GACUCUAGUUGAAGUCCUGG_AG__GUGUGAC ............((((((((..(((((.(((((.....))))))))))..)))).)))).............((((((((.........))))))))................ (-25.58 = -24.70 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:33 2006