Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,187,100 – 12,187,208 |
Length | 108 |
Max. P | 0.613808 |
Location | 12,187,100 – 12,187,208 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -22.81 |
Energy contribution | -22.97 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.19 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12187100 108 - 22224390 GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGGCUAUCUCGUUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA .....(((((((((((((((((..((((---.(((..--------(((...((.(((............))).))....)))..))).))))....)))))))))...-...)))))))) ( -34.00) >DroSec_CAF1 13567 108 - 1 GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGACUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA .....(((((((((((((((((..((((---.(((..--------(((((((....))))...((........))....)))..))).))))....)))))))))...-...)))))))) ( -32.60) >DroSim_CAF1 16810 108 - 1 GCGGCUGUUUCGUUUUGCCGGCGAGAAG---GAGACA--------CGAACAGCUGGCUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAA-AAAGCGAAAUA .....(((((((((((((((((..((((---.(((..--------(((...((.(((((.......)).))).))....)))..))).))))....)))))))))...-...)))))))) ( -35.30) >DroEre_CAF1 13542 108 - 1 GCGGCUGUUUCGUUUUGCCGGCGGAAAG---GAGACG--------CGAACAGCUGGCUGUCUCGCUCGCGCCUGCAACAUCGGAUCUGCUUCAUAAGCUGGCAGAAAU-AAAGCGAAAUA .....(((((((((((((.((((((..(---....)(--------(((((((....)))).)))))).)))).)).........((((((.........))))))...-))))))))))) ( -39.60) >DroAna_CAF1 25907 115 - 1 CCAGCUGUGUUC-UUGGCCGGAAAAAAAAUCGAGAAAAUAGCCGCCGGCCAGCUGGCCAUCUCGUUCUGGCCC----CGAUGGUUUUACUUCAUAAGCUGGCCAAAACAAAAGCAAAAAA ...(((((.(((-((((............))))))).)))))....(((((((((((((........))))).----..((((.......)))).))))))))................. ( -35.90) >consensus GCGGCUGUUUCGUUUUGCCGGCGAGAAG___GAGACA________CGAACAGCUGGCUGUCUCGCUCACGCCUGCAACAUUGGAUCUACUUCAUAAGCUGGCAGAAAU_AAAGCGAAAUA ...(((......((((((((((.........((((((....................))))))((....)).........................)))))))))).....)))...... (-22.81 = -22.97 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:27 2006