Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,185,502 – 12,185,616 |
Length | 114 |
Max. P | 0.961929 |
Location | 12,185,502 – 12,185,616 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -23.00 |
Energy contribution | -23.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.13 |
Structure conservation index | 0.90 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12185502 114 + 22224390 UACAAAAAACCGAGCAAAAAAAAAAAAAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCUUC-CUUGGCAUAAAUA .........(((((..........................(((((.(((....))).))))).(((((((....((((...))))...)))))))......-)))))........ ( -23.10) >DroSec_CAF1 12120 106 + 1 AGCAA-AAACCGAGUAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGAGUGACAAGUGACUUGGACUCGCAGCUCCAUCUCUUGGCAUAAAUA .....-...(((((....--------.....................((((...)))).(((.(((((((((..((((...)))).))))))))).)))...)))))........ ( -28.30) >DroSim_CAF1 15349 107 + 1 AACAAAAAACCGAGCAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCAUCCCUUGGCAUAAAUA .........(((((....--------.....................((((...)))).(((.(((((((....((((...))))...))))))).)))...)))))........ ( -23.30) >DroEre_CAF1 12046 106 + 1 AACAAAAAGCCGAGUAAA--------AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCC-UCCCUUGGCAUAAAUA ........((((((....--------..............(((((.(((....))).))))).(((((((....((((...))))...)))))))...-...))))))....... ( -27.70) >consensus AACAAAAAACCGAGCAAA________AAACAAAACCAAAACUAAUUUCGUCAGCGACGUUGGCGUUGCGACUGACAAGUGACUUGGACUCGCAGCUCCAUCCCUUGGCAUAAAUA .........(((((..........................(((((.(((....))).))))).(((((((....((((...))))...))))))).......)))))........ (-23.00 = -23.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:26 2006