Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,179,749 – 12,179,854 |
Length | 105 |
Max. P | 0.744540 |
Location | 12,179,749 – 12,179,854 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -21.90 |
Energy contribution | -23.40 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.78 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12179749 105 + 22224390 AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUAGGCG--AGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACAGCUUAGGUC-AGAUA ........................(((((((((.(..(--(((.((...........((....))((((......))))..)).))))...).)))))))))-..... ( -22.20) >DroSec_CAF1 6265 108 + 1 AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUGGGCCAAAGACGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUAGCACUUUAAACUGCUUAGGUCCAGAUU ......................((((((((((..(...((((...............((....))((((......)))).....))))...)..)))))))))).... ( -27.80) >DroSim_CAF1 9174 108 + 1 AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUGGGCGAGAGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACUGCUUAGGUCCAAAUU ......................((((((((((..(...((((((.............((....))((((......))))..)).))))...)..)))))))))).... ( -32.00) >DroEre_CAF1 6695 104 + 1 AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGCAGUCG--AGGCGUAAUUGAAAACCCGAUUUCCCC-GGGGCAACAGGUGGCACUUUAAGCUGCUUGGGUC-GAAUA ........................((((..((((((.(--(((.((..(((....((((.......)-)))....)))...)).))))..))))))..))))-..... ( -30.40) >consensus AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUAGGCG__AGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACUGCUUAGGUC_AAAUA ......................(((((((((((((...((((((......((((......)))).((((......))))..)).))))...))))))))))))).... (-21.90 = -23.40 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:21 2006