Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,368,079 – 1,368,199 |
Length | 120 |
Max. P | 0.930527 |
Location | 1,368,079 – 1,368,199 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -25.41 |
Energy contribution | -26.07 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.96 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1368079 120 + 22224390 CUUCUUCAGCUCUGCCUCCGUUUUCCCUUUCCUUGCUUUCUCUUUCCUUGACUGCCCCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCC ..((((((((.(((((((((..............((..((.........))..))..))))))))).))...((......))(((......)))........))).)))........... ( -23.39) >DroSec_CAF1 504 120 + 1 CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... ( -27.94) >DroSim_CAF1 534 120 + 1 CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... ( -27.94) >consensus CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... (-25.41 = -26.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:12 2006