Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,177,969 – 12,178,081 |
Length | 112 |
Max. P | 0.538057 |
Location | 12,177,969 – 12,178,081 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.23 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -22.23 |
Energy contribution | -22.57 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.94 |
Structure conservation index | 0.69 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12177969 112 + 22224390 UAUUU--CGGUGCUCCAGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA------CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG .....--.((((.....(((.((((.((......((....))...)).)))).)))........((((((.------(((((((........)))))))..))))))))))......... ( -29.50) >DroEre_CAF1 5038 114 + 1 UAUUUUUGGGUGCUCCGGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA------CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG ..((..((((((..........(((((..((..(((..........)))..))..).))))...((((((.------(((((((........)))))))..))))))))))))..))... ( -34.40) >DroAna_CAF1 13501 116 + 1 UAUUU--CAGGUCUCUGGCAUUUUCGGUGGCAAUUGGUAACUUAAAUGAAGACUGUCCAGAUUUUGGAAAAAGCCCCCUGAAAUAGUAUCCAAUUUCAGGGUUGCCAC-CCCAUUUACC- .....--..(((...(((.......((((((((..(((..(((.....)))....(((((...)))))....)))(((((((((........))))))))))))))))-))))...)))- ( -32.81) >consensus UAUUU__CGGUGCUCCGGCAUUUUUGGUGGCAAUUGGUGACAUAAACGAAGGCUGCACAGAUUUUGGCAAA______CUGAAAUAGUAUCCAAUUUCAGGGUUGCCACACCCAUUAAACG ........(((((....))))).(((((((....(((((((.....(((((.((....)).)))))...........(((((((........))))))).)))))))...)))))))... (-22.23 = -22.57 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:19 2006