Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,177,767 – 12,177,887 |
Length | 120 |
Max. P | 0.973755 |
Location | 12,177,767 – 12,177,887 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -37.45 |
Energy contribution | -38.12 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.12 |
Mean z-score | -2.55 |
Structure conservation index | 0.95 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12177767 120 + 22224390 CGUGCUGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGGCGGCAUUUAGGUGUAUAAUAUGCCACGUGCACUGGCA ..(((..((((..............(((((((((.............)))))..))))((...((((((((....)))))))).((((((((......))).))))).)).))))..))) ( -41.12) >DroEre_CAF1 4847 120 + 1 CGUGCCGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGCCGGCAUUUAGGUGUAUAAUAUGCCACGUGCAUCGGCA ..(((((((((..............(((((((((.............)))))..))))((....(((((((....)))))))..((((((((......))).))))).)).))))))))) ( -42.02) >DroAna_CAF1 13288 116 + 1 CGUGCUAGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCCGCCGGCAUUUAGUUCUAUAAUAUGCCACGUGCACA---- .((((..(.((..............(((((((((.............)))))..)))).......((((((....)))))))))((((((((......))).)))))....)))).---- ( -35.12) >consensus CGUGCUGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGCCGGCAUUUAGGUGUAUAAUAUGCCACGUGCACAGGCA ...((((((((..............(((((((((.............)))))..))))((....(((((((....)))))))..((((((((......))).))))).)).)))))))). (-37.45 = -38.12 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:18 2006